CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6119 contig Csv1_Contig6119:75..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 6.463e-74
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGI +VYDVTD +SFNNVKQWL EIDRYA++ VNKLLVG +
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNK 122          

HSP 2 Score: 72.7886 bits (177), Expect = 6.463e-74
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 670
            NK D+T  K V Y  AK FAD +GIPF+ETSAK+++NVEQAF+ MA  IK+RM S
Sbjct:  121 NKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGS 175          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 4.148e-73
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ+SFNNVKQWL EIDRYA + VN+LLVG +
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNK 122          

HSP 2 Score: 71.2478 bits (173), Expect = 4.148e-73
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 670
            NK D+   K V Y  AK FAD + IPF+ETSAKDSTNVEQAF+ M+  IK+RM +
Sbjct:  121 NKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGN 175          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.904e-72
Identity = 105/122 (86.07%), Postives = 116/122 (95.08%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            M+ EYDYLFKLLLIGDS VGKSCLLLRFADD+YI+SYISTIGVDFKIRT+EQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD T+ ESFNNVKQWL+EIDRYA+++V KLL+G +
Sbjct:    1 MSNEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNK 122          

HSP 2 Score: 73.1738 bits (178), Expect = 5.904e-72
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            + NK D+  +K VS ET +A ADE+GIPF+ETSAKDS NVEQAF+ +A  IK +M SQ
Sbjct:  119 IGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQ 176          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.906e-72
Identity = 102/122 (83.61%), Postives = 114/122 (93.44%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MNP+Y YLFKLLLIGDSGVGKSCLLLRFADD+Y ES+ISTIGVDFKIRT+E +GKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ +F NV+QWL EIDR+A +NVNKLLVG +
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNK 122          

HSP 2 Score: 77.7962 bits (190), Expect = 5.906e-72
Identity = 40/59 (67.80%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM-ASQPS 679
            NK DL A K V + TAKAFAD + IPF+ETSAK STNVEQAFM MA  IK+R+ ASQP+
Sbjct:  121 NKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPT 179          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 8.402e-71
Identity = 104/122 (85.25%), Postives = 115/122 (94.26%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            M+ E+DYLFKLLLIGDS VGKSC LLRFADDSY++SYISTIGVDFKIRTVE +GKT+KLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+TD ESFNNVKQWL+EIDRYA+D+V KLLVG +
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNK 122          

HSP 2 Score: 69.707 bits (169), Expect = 8.402e-71
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 667
            NKCDL  N+ V    A+A+A E+GIPF+ETSAK+S NVE+AF+AM+A+IK   A
Sbjct:  121 NKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKA 174          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 1.096e-70
Identity = 104/122 (85.25%), Postives = 112/122 (91.80%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MNP YD LFKLLLIGDSGVGKSCLLLRFADD Y ESYISTIGVDFKI+T+E DGKTIKLQIWDTAGQERF TITSSYYRGAHG ++VYDVTDQES+ NVKQWL EIDR+AS+NVNKLLVG +
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNK 122          

HSP 2 Score: 73.1738 bits (178), Expect = 1.096e-70
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            NK DLT  K V   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK +M
Sbjct:  121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQM 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 3.170e-70
Identity = 104/122 (85.25%), Postives = 111/122 (90.98%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+  DGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD  SFNNVKQW+ EI RYA D+V +LLVG +
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNK 122          

HSP 2 Score: 69.3218 bits (168), Expect = 3.170e-70
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  488 TNFWLXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            T   + NKCDL   K V   TA+ +AD +GIPF+ETSAK S NVEQAFM MA+ IK
Sbjct:  115 TRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIK 170          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 8.368e-68
Identity = 102/122 (83.61%), Postives = 110/122 (90.16%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y   YISTIGVDFKI+TVE DGKT+KLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVG +
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122          

HSP 2 Score: 67.0106 bits (162), Expect = 8.368e-68
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NKCDL   + V Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M+ Q
Sbjct:  121 NKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.893e-65
Identity = 97/123 (78.86%), Postives = 112/123 (91.06%), Query Frame = 1
Query:  142 TMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +M PE+D+ FK+LLIGDSGVGKSCLLLRFADDS+ +++ISTIGVDFKI+T+  DGKTIKLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA +NVNKLLVG +
Sbjct:    2 SMAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNK 124          

HSP 2 Score: 63.1586 bits (152), Expect = 4.893e-65
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 667
            NK DL   K V    AK+FA+  GIPF+ETSAK++TNVE+ F++MA  IK+R+A
Sbjct:  123 NKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLA 176          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.277e-59
Identity = 83/125 (66.40%), Postives = 110/125 (88.00%), Query Frame = 1
Query:  136 STTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +T  +  YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+D+VNK+L+G +
Sbjct:    5 ATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNK 129          

HSP 2 Score: 64.3142 bits (155), Expect = 1.277e-59
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679
            + NKCD+   K V     K+ ADE GI F+ETSAK+S NVE+AF+++A  IK RM   P+
Sbjct:  126 IGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPN 185          
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR6.463e-7487.70GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
YPT1_SCHPO4.148e-7388.52GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RABD1_ARATH5.904e-7286.07Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1A_DICDI5.906e-7283.61Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPTM1_MAIZE8.402e-7185.25GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1C_HUMAN1.096e-7085.25Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1B_DICDI3.170e-7085.25Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_YEAST8.368e-6883.61GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI4.893e-6578.86Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI1.277e-5966.40Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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