CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.278e-59
Identity = 86/121 (71.07%), Postives = 108/121 (89.26%), Query Frame = 1
Query:  148 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +PEYD L K+L+IGDSGVGKSC+LLRFAD+ + +SYISTIGVDF IRT+E DGK IKLQIWDTAGQERF+TIT+SYYRGAHG+IIVYD+T  +SFN++K+WL ++DR+AS +V KL+VG +
Sbjct:   27 HPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNK 147          

HSP 2 Score: 62.7734 bits (151), Expect = 1.278e-59
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            NKCDL + + V ++ AK FADE+ IP METSAK+ST +++AF+ +A+ IK
Sbjct:  146 NKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.067e-58
Identity = 82/125 (65.60%), Postives = 108/125 (86.40%), Query Frame = 1
Query:  136 STTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +T     YD+L KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+  I+++ASD+VNK+L+G +
Sbjct:    5 ATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNK 129          

HSP 2 Score: 66.2402 bits (160), Expect = 1.067e-58
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679
            + NKCD+T  K V     K+ ADE GI F+ETSAK+S NVE+AF+ +A  IK RM   P+
Sbjct:  126 IGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN 185          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.798e-56
Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +YDYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++ASDNVNK+LVG +
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129          

HSP 2 Score: 48.1358 bits (113), Expect = 2.798e-56
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAK--AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 667
            NK D+  +K  +  TAK  A ADE GI F ETSAK + NVE+ F ++A  IK R+A
Sbjct:  128 NKADMDESKR-AVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.754e-56
Identity = 85/121 (70.25%), Postives = 106/121 (87.60%), Query Frame = 1
Query:  151 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQV 513
            P+YD L KLLL+GDSGVGKSCLLLRF DD +  S+I+TIG+DFKI+ V+ DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+  I+++ASDNVNK+LVG ++
Sbjct:    8 PDYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKL 128          

HSP 2 Score: 49.6766 bits (117), Expect = 4.754e-56
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2
Query:  506 NKCDLTANKXV-SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673
            NK DL  +K V S    +A ADE G  F ETSAKD+ +VE+AF+A+A  +  RM  +
Sbjct:  126 NKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGE 182          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 4.760e-56
Identity = 82/118 (69.49%), Postives = 107/118 (90.68%), Query Frame = 1
Query:  157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++AS+NV K+L+G +
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNK 123          

HSP 2 Score: 55.8398 bits (133), Expect = 4.760e-56
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            + NKCD    + VS+E  +A ADE+G+ F+E SAK + NV++AF  +A  IK
Sbjct:  120 IGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.054e-55
Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            +YDYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++ASDNVNK+LVG +
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129          

HSP 2 Score: 46.2098 bits (108), Expect = 1.054e-55
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAK--AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679
            NK D+  +K  +  TAK  A ADE GI F ETSAK + NVE+ F ++   IK R++   S
Sbjct:  128 NKADMDESKR-AVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDS 186          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54
Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++G +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122          

HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            L NKCD+   + VS E  +  A + GI F+ETSAK STNVE+AF  +A  I  ++
Sbjct:  119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54
Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++G +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122          

HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            L NKCD+   + VS E  +  A + GI F+ETSAK STNVE+AF  +A  I  ++
Sbjct:  119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54
Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1
Query:  145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510
            M   YDYLFKLLLIGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++G +
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122          

HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664
            L NKCD+   + VS E  +  A + GI F+ETSAK STNVE+AF  +A  I  ++
Sbjct:  119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.117e-53
Identity = 86/121 (71.07%), Postives = 107/121 (88.43%), Query Frame = 1
Query:  154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGKQV 513
            EYDYLFK+++IGDSG GKS LLLRFAD++Y ESY+STIGVDFKI+TV+ D  TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+G ++
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKI 123          

HSP 2 Score: 49.6766 bits (117), Expect = 2.117e-53
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679
            + NK DL  ++ VS + AK  A++  + ++E SAK  +NVE+AF  +A ++KD++   PS
Sbjct:  119 IGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS 178          
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_DICDI1.278e-5971.07Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB8B_DICDI1.067e-5865.60Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RB1BV_BETVU2.798e-5673.11Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPTV2_VOLCA4.754e-5670.25GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO4.760e-5669.49GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
ARA3_ARATH1.054e-5573.11Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8B_RAT9.566e-5463.93Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB9.566e-5463.93Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE9.566e-5463.93Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB1_THEPA2.117e-5371.07Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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