CF417146
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.278e-59 Identity = 86/121 (71.07%), Postives = 108/121 (89.26%), Query Frame = 1 Query: 148 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 +PEYD L K+L+IGDSGVGKSC+LLRFAD+ + +SYISTIGVDF IRT+E DGK IKLQIWDTAGQERF+TIT+SYYRGAHG+IIVYD+T +SFN++K+WL ++DR+AS +V KL+VG + Sbjct: 27 HPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNK 147 HSP 2 Score: 62.7734 bits (151), Expect = 1.278e-59 Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 2 Query: 506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655 NKCDL + + V ++ AK FADE+ IP METSAK+ST +++AF+ +A+ IK Sbjct: 146 NKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIK 195
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.067e-58 Identity = 82/125 (65.60%), Postives = 108/125 (86.40%), Query Frame = 1 Query: 136 STTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 +T YD+L KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E +GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF +++ W+ I+++ASD+VNK+L+G + Sbjct: 5 ATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNK 129 HSP 2 Score: 66.2402 bits (160), Expect = 1.067e-58 Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679 + NKCD+T K V K+ ADE GI F+ETSAK+S NVE+AF+ +A IK RM P+ Sbjct: 126 IGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPN 185
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.798e-56 Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 1 Query: 154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 +YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASDNVNK+LVG + Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 HSP 2 Score: 48.1358 bits (113), Expect = 2.798e-56 Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 2 Query: 506 NKCDLTANKXVSYETAK--AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 667 NK D+ +K + TAK A ADE GI F ETSAK + NVE+ F ++A IK R+A Sbjct: 128 NKADMDESKR-AVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 4.754e-56 Identity = 85/121 (70.25%), Postives = 106/121 (87.60%), Query Frame = 1 Query: 151 PEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQV 513 P+YD L KLLL+GDSGVGKSCLLLRF DD + S+I+TIG+DFKI+ V+ DGK +KLQIWDTAGQERFRTITS+YYRGA GII+VYD+TD+ SFNNV+ W+ I+++ASDNVNK+LVG ++ Sbjct: 8 PDYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKL 128 HSP 2 Score: 49.6766 bits (117), Expect = 4.754e-56 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 Query: 506 NKCDLTANKXV-SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 673 NK DL +K V S +A ADE G F ETSAKD+ +VE+AF+A+A + RM + Sbjct: 126 NKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGE 182
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 4.760e-56 Identity = 82/118 (69.49%), Postives = 107/118 (90.68%), Query Frame = 1 Query: 157 YDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 YDYL KLLLIGDSGVGKSCLLLRF++DS+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI+++YDVTD++SF+NV+ W + ++++AS+NV K+L+G + Sbjct: 6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNK 123 HSP 2 Score: 55.8398 bits (133), Expect = 4.760e-56 Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655 + NKCD + VS+E +A ADE+G+ F+E SAK + NV++AF +A IK Sbjct: 120 IGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIK 171
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 1.054e-55 Identity = 87/119 (73.11%), Postives = 107/119 (89.92%), Query Frame = 1 Query: 154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 +YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++ASDNVNK+LVG + Sbjct: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNK 129 HSP 2 Score: 46.2098 bits (108), Expect = 1.054e-55 Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 2 Query: 506 NKCDLTANKXVSYETAK--AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679 NK D+ +K + TAK A ADE GI F ETSAK + NVE+ F ++ IK R++ S Sbjct: 128 NKADMDESKR-AVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDS 186
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54 Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1 Query: 145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 M YDYLFKLLLIGDSGVGK+CLL RF++D++ ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ +AS +V ++++G + Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122 HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54 Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664 L NKCD+ + VS E + A + GI F+ETSAK STNVE+AF +A I ++ Sbjct: 119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54 Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1 Query: 145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 M YDYLFKLLLIGDSGVGK+CLL RF++D++ ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ +AS +V ++++G + Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122 HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54 Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664 L NKCD+ + VS E + A + GI F+ETSAK STNVE+AF +A I ++ Sbjct: 119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 9.566e-54 Identity = 78/122 (63.93%), Postives = 106/122 (86.89%), Query Frame = 1 Query: 145 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGKQ 510 M YDYLFKLLLIGDSGVGK+CLL RF++D++ ++ISTIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+ I+ +AS +V ++++G + Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNK 122 HSP 2 Score: 54.299 bits (129), Expect = 9.566e-54 Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 664 L NKCD+ + VS E + A + GI F+ETSAK STNVE+AF +A I ++ Sbjct: 119 LGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKL 173
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.117e-53 Identity = 86/121 (71.07%), Postives = 107/121 (88.43%), Query Frame = 1 Query: 154 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGKQV 513 EYDYLFK+++IGDSG GKS LLLRFAD++Y ESY+STIGVDFKI+TV+ D TIKLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+G ++ Sbjct: 3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKI 123 HSP 2 Score: 49.6766 bits (117), Expect = 2.117e-53 Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 2 Query: 500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 679 + NK DL ++ VS + AK A++ + ++E SAK +NVE+AF +A ++KD++ PS Sbjct: 119 IGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPS 178 The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bpback to top |