CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-16
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNK 117          

HSP 2 Score: 29.6462 bits (65), Expect = 1.852e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.852e-16
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGKQV*SH 522
            FK++++G  GVGKS L ++F    ++E Y  TI   ++ + VE D     L+I DTAG E+F  +   Y +   G ++VY +    +FN +     +I R    ++V  +LVG +   H
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLH 123          

HSP 2 Score: 36.1946 bits (82), Expect = 1.852e-16
Identity = 20/50 (40.00%), Postives = 27/50 (54.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + +S E  +  A + G   F+E SAK+  NVEQ F  +   I
Sbjct:  118 NKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQI 167          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RASV_DICDI (Ras-like protein rasV OS=Dictyostelium discoideum GN=rasV PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.387e-16
Identity = 35/129 (27.13%), Postives = 68/129 (52.71%), Query Frame = 1
Query:  127 LHKSTTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGKQ 510
            ++++   N   + + +L ++GD GVGK+ +  +F  + ++  Y  TI   ++ +    D K+  L I DTAGQ+    +   + R   G ++VY +T + SFN V  +  +I R    D+V  +++G +
Sbjct:   20 INENNCNNNNKNNIVQLCIMGDGGVGKTAVTTQFISNHFVYYYDPTIEDSYRKQICVSD-KSYILDILDTAGQDELTAMRDQWIRSCEGFVLVYSITCKSSFNQVLNFREQIIRVLDRDDVPIMMIGNK 147          

HSP 2 Score: 42.743 bits (99), Expect = 2.387e-16
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            + NK DL   + V+Y   K  A  +G+ FME SAK+ +N+++ F      +K
Sbjct:  144 IGNKSDLVNERQVTYHEGKELAQRLGMSFMEVSAKNRSNIDEVFHEAVCCVK 195          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.406e-16
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG +
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 117          

HSP 2 Score: 35.4242 bits (80), Expect = 2.406e-16
Identity = 22/59 (37.29%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI---KDRMASQ 673
            NK DL   + V  + A+  A   GIPF+ETSAK    V+ AF  +   I   K++M+ +
Sbjct:  116 NKYDLPT-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKE 173          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.109e-16
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGKQ 510
            +KL+++G  GVGKS + ++F    + E +  TI   +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +D+   +LVG +
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNK 135          

HSP 2 Score: 33.113 bits (74), Expect = 3.109e-16
Identity = 18/52 (34.62%), Postives = 25/52 (48.08%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 661
            NK DL   + VS E   + A E   PF ETSA     ++  F A+   I+ +
Sbjct:  134 NKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREIRKK 185          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 3.110e-16
Identity = 31/100 (31.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR 468
            +KL+++G  GVGKS L ++F    +++ Y  TI   ++ + +  D   + L + DTAGQE +  +   Y R   G ++VY +T + SF  +  +  +I R
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDDEVAL-LDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILR 109          

HSP 2 Score: 40.4318 bits (93), Expect = 3.110e-16
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            NKCDL   + V     +  A   G  F+ETSAK   NV++AF  +   I+
Sbjct:  123 NKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNLVREIR 172          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RASN_DANRE (GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.127e-16
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 504
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF +V  +  +I R   SD+V  +LVG
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADVHLYREQIKRVKDSDDVPMVLVG 115          

HSP 2 Score: 34.6538 bits (78), Expect = 3.127e-16
Identity = 20/50 (40.00%), Postives = 26/50 (52.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            N CDL   + V  + A+  A   GI F+ETSAK    VE AF  +   I+
Sbjct:  116 NICDLA--RTVDTKQAQELARSYGIEFVETSAKTRQGVEDAFYTLVREIR 163          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RASK_XENLA (GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.127e-16
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++   + +++ Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG +
Sbjct:    4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNIKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 117          

HSP 2 Score: 36.5798 bits (83), Expect = 3.127e-16
Identity = 20/50 (40.00%), Postives = 28/50 (56.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            NKC L + + V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct:  116 NKCALPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.041e-16
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGKQ 510
            +KL+++G  GVGKS + ++F    + E +  TI   +KIR +  D +   L I DTAGQ  F  +   Y R   G II Y +TD+ SF+ V+++   I R   +D+   +LVG +
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNK 135          

HSP 2 Score: 32.7278 bits (73), Expect = 4.041e-16
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 2
Query:  506 NKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            NK DL   + V+ E   A A E   PF ETSA     ++  F A+   I+
Sbjct:  134 NKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIR 183          
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.052e-16
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGKQ 510
            ++L+++G  GVGKS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    D    +L+G +
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD-RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 128          

HSP 2 Score: 36.965 bits (84), Expect = 4.052e-16
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 2
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            + NK DL   + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct:  125 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176          
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP1B_CYPCA1.852e-1635.65Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAPA_DICDI1.852e-1631.93Ras-related protein rapA OS=Dictyostelium discoide... [more]
RASV_DICDI2.387e-1627.13Ras-like protein rasV OS=Dictyostelium discoideum ... [more]
RASK_RIVMA2.406e-1632.17GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RIT1_MOUSE3.109e-1635.65GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RASL_COPCI3.110e-1631.0024 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RASN_DANRE3.127e-1634.51GTPase NRas OS=Danio rerio GN=nras PE=2 SV=1[more]
RASK_XENLA3.127e-1632.17GTPase KRas OS=Xenopus laevis GN=kras PE=2 SV=1[more]
RIT1_HUMAN4.041e-1635.65GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RRAS2_MOUSE4.052e-1632.17Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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