CF417146

Overview
NameCF417146
Unique NameCF417146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6119 contig Csv1_Contig6119:75..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.052e-16
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGKQ 510
            ++L+++G  GVGKS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    D    +L+G +
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD-RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 128

HSP 2 Score: 36.965 bits (84), Expect = 4.052e-16
Identity = 18/52 (34.62%), Postives = 29/52 (55.77%), Query Frame = 2 
Query:  500 LXNKCDLTANKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 655
            + NK DL   + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct:  125 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.068e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 30.0314 bits (66), Expect = 4.068e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_MACFA (Ras-related protein Rap-1b OS=Macaca fascicularis GN=RAP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_HUMAN (Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_CHICK (Ras-related protein Rap-1b OS=Gallus gallus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RAP1B_BOVIN (Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.288e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 1 
Query:  169 FKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGKQ 510
            +KL+++G  GVGKS L ++F    ++E Y  TI   ++ + VE D +   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVG +
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 117

HSP 2 Score: 29.6462 bits (65), Expect = 5.288e-16
Identity = 17/50 (34.00%), Postives = 24/50 (48.00%), Query Frame = 2 
Query:  506 NKCDLTANKXVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 652
            NKCDL   + V  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct:  116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
[Close]
BLAST of CF417146 vs. ExPASy Swiss-Prot
Match: RABU_DICDI (Ras-related protein RabU OS=Dictyostelium discoideum GN=rabU PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.859e-16
Identity = 44/124 (35.48%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:  148 NPEYDYLFKLLLIG-DSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSS----YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLV 501
            N E D +F++++IG D   G   LL +F    +     S +GVDF I+T+  D + IKLQIW    Q ++   TS      Y+GAHG ++VY    Q+SF+N +  W+ +ID+++++   + LV
Sbjct:    6 NLEQDCIFRIVIIGYDYECGIKSLLKKFTLGEFSPFPESQVGVDFDIKTINVDNQDIKLQIWP---QNKYFNDTSDKRDFLYKGAHGYLLVYGCHSQKSFDNLLNDWMVQIDKFSNEFSKRNLV 126

HSP 2 Score: 31.9574 bits (71), Expect = 6.859e-16
Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 2 
Query:  527 NKXVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 661
            N  V     K +A+   IPF E + K++ NV++ F+ +A  IK++
Sbjct:  143 NYLVDSNITKQWANSKNIPFFEINPKENFNVDEPFIQLARLIKNQ 187
The following BLAST results are available for this feature:
BLAST of CF417146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRAS2_HUMAN4.052e-1632.17Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RAP1B_RAT4.068e-1634.78Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAP1B_PONAB5.288e-1634.78Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR5.288e-1634.78Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE5.288e-1634.78Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]
RAP1B_MACFA5.288e-1634.78Ras-related protein Rap-1b OS=Macaca fascicularis ... [more]
RAP1B_HUMAN5.288e-1634.78Ras-related protein Rap-1b OS=Homo sapiens GN=RAP1... [more]
RAP1B_CHICK5.288e-1634.78Ras-related protein Rap-1b OS=Gallus gallus GN=RAP... [more]
RAP1B_BOVIN5.288e-1634.78Ras-related protein Rap-1b OS=Bos taurus GN=RAP1B ... [more]
RABU_DICDI6.859e-1635.48Ras-related protein RabU OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-076 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417146 ID=CF417146; Name=CF417146; organism=Citrus sinensis; type=EST; length=679bp
TTTTTTTTCTTTTTTGTCTTGTCTTCTGTTTTTGTTGACATTTAATTTCC
CGGCGAAACTCATATCACGAGATCTCGCCGAAGATAATAATCTGTTTTGG
TTAACCGAACCCGAAGCTTTTTTCTTTTACACAAATCTACGACGATGAAT
CCTGAATATGACTATCTGTTTAAGCTTCTGCTTATTGGAGATTCCGGTGT
TGGCAAATCTTGTCTTCTCTTGAGATTTGCTGATGATTCATATATTGAGA
GTTACATCAGCACCATAGGAGTTGATTTTAAAATACGCACTGTTGAGCAA
GATGGGAAGACCATTAAACTTCAAATTTGGGATACTGCTGGTCAAGAAAG
ATTTAGGACAATCACCAGCAGCTACTACCGTGGGGCACATGGTATCATAA
TTGTTTATGATGTGACAGACCAAGAGAGCTTCAATAATGTCAAGCAGTGG
TTGAATGAAATTGACCGTTATGCTAGTGATAATGTCAACAAACTTCTGGT
TGGNAAACAAGTGTGATCTCACTGCAAATAAGGNTGTCTCGTACGAAACA
GCCAAGGCATTTGCAGATGAAATTGGAATACCTTTCATGGAAACTAGTGC
AAAAGATTCTACCAACGTGGAACAGGCATTCATGGCCATGGCTGCTTCAA
TCAAGGATAGAATGGCAAGTCAACCATCC
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