CF417147 | Citrus Genome Database

Overview


Name	CF417147
Unique Name	CF417147
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	694

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 9.498e-24
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 46.9802 bits (110), Expect = 9.498e-24
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TLADYNIQKESTLHLVLRLRGG
Sbjct:   55 TLADYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 49/65 (75.38%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVKAKIQ    GIPPDQ +        LEDGRTLADYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 83.9593 bits (206), Expect = 2.094e-23
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 2.094e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVKAKIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKAKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.248e-35
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.4185 bits (202), Expect = 2.725e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 46.9802 bits (110), Expect = 2.725e-23
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TLADYNIQKESTLHLVLRLRGG
Sbjct:   55 TLADYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 48/65 (73.85%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTI+NVKAKIQ    GIPPDQ +        LEDGRTLADYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIENVKAKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 4.617e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 4.617e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK+KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 4.617e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 4.617e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK+KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 4.617e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 4.617e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK+KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 4.617e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 4.617e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK+KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.407e-34
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.8037 bits (203), Expect = 4.617e-23
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 4.617e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.4185 bits (202), Expect = 2.495e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK+KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKSKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 81.2629 bits (199), Expect = 6.008e-23
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 46.9802 bits (110), Expect = 6.008e-23
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TLADYNIQKESTLHLVLRLRGG
Sbjct:   55 TLADYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 82.0333 bits (201), Expect = 3.259e-15
Identity = 47/65 (72.31%), Postives = 49/65 (75.38%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTI NVKAK+Q    GIPPDQ +        LEDGRTLADYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIQNVKAKVQD-KEGIPPDQ-QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72

[Close]

BLAST of CF417147 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 1

Query:    1 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 225
            QIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    2 QIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 82.0333 bits (201), Expect = 7.819e-23
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 2

Query:  257 KQLLLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 388
            K + LEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGR
Sbjct:   11 KTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGR 54

HSP 3 Score: 45.8246 bits (107), Expect = 7.819e-23
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3

Query:  390 TLADYNIQKESTLHLVLRLRGG 455
            TL+DYNIQKESTLHLVLRLRGG
Sbjct:   55 TLSDYNIQKESTLHLVLRLRGG 76

HSP 4 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 47/65 (72.31%), Postives = 49/65 (75.38%), Query Frame = 1

Query:  484 GKPSTLEVESSDTIDNVKAKIQX*XRGIPPDQPEG*SLLENNLEDGRTLADYNIQKESTLHLVLR 678
            GK  TLEVESSDTIDNVK KIQ    GIPPDQ +        LEDGRTL+DYNIQKESTLHLVLR
Sbjct:   10 GKTITLEVESSDTIDNVKQKIQD-KEGIPPDQ-QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72

The following BLAST results are available for this feature:

BLAST of CF417147 vs. ExPASy Swiss-Prot

BLAST of CF417147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92


Match Name	E-value	Identity	Description
UBIQ_ARATH	2.835e-35	100.00	Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=...	[more]
UBIQ_COPCO	6.315e-35	98.67	Ubiquitin OS=Coprinus congregatus PE=1 SV=1	[more]
UBIQ_CHLRE	8.248e-35	98.67	Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=...	[more]
UBIQ_YEAST	1.407e-34	97.33	Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1...	[more]
UBIQ_SCHPO	1.407e-34	97.33	Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=...	[more]
UBIQ_KLULA	1.407e-34	97.33	Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=...	[more]
UBIQ_CRYNE	1.407e-34	97.33	Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ...	[more]
UBIQ_CANAL	1.407e-34	97.33	Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1	[more]
UBL1_ORYSJ	1.837e-34	97.33	Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja...	[more]
UBIQ_NEUCR	2.400e-34	97.33	Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-077 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-001_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417147 ID=CF417147; Name=CF417147; organism=Citrus sinensis; type=EST; length=694bp
CAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGA
AAGCTCTGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGG
GCATCCCACCTGATCAACAGAGGTTAATCTTTGCCGGCAAACAACTTGAA
GATGGTCGTACTCTTGCTGACTACAACATCCAGAAGGAGTCAACCCTCCA
TTTGGTGCTTCGTCTCCGTGGTGGCATGCAGATCTTTGTGAAAACCCTCA
CCGGAAAAACAATTACTCTTGGAGGTTGAAAGTTCTGACACCATCGACAA
CGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAGCAGA
GGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGGACTCTTGCAGA
CTATAACATCCAGAAAGAATCCACTCTTCACTTGGTTCTTCGCCTCCGTG
GTGGTATGCAGATTTTTGTGAAGACACTCACTGGGAAAACCATCCACATT
GGAGGTTGAGAGTTCGGACACAATTGACAATGTGAAGGCTAAGATCCAGN
GATAANGGAGGGGGATTCCCCCAGACCAGCCAGAAGGTTGATCTTTGCTG
GAAAACAACTTGGAGGATGGAAGGACTCTTGCTGATTACAACATCCAGAA
GGAGTCCACTCTGCATCTTGTGCTCCGTCCTCCCGTGGGAGGTT