CF417151
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24 Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 1 Query: 97 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG---PQ-RSPSSVR---AVWVQGGS 444 AP +EL +GGRI+MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR ++ + S W L GALG P+ S + V+ AVW + G+ Sbjct: 16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-------ELEVIHSRWAML-GALGCVFPEILSKNGVKFGEAVWFKAGA 133 HSP 2 Score: 77.0258 bits (188), Expect = 9.456e-14 Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + FSEGGLDYLGNP+L+HAQSILAIWA+ L G+ + + G LGE D +YPGG+FDP+G+ Sbjct: 122 KFGEA-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF--VEGYRVGGGPLGEGLDKVYPGGAFDPLGL 197
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24 Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 1 Query: 130 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGSSDPSARAGLTTWETQA*STPRASWPSGLCQVVLDGS 552 R++MR+T SKS S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NR L++ H + + G L P+ + S V+ AVW + G+ S GL + ++ CQVVL G+ Sbjct: 35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNR-----ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173 HSP 2 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + FSEGGLDYLGNPSL+HAQSILAIWA L + +AG LGEVTDP+YPGGSFDP+G+ Sbjct: 127 KFGEA-VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGL 202
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23 Identity = 73/160 (45.62%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 109 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG-------PQRSPSSVRAVWVQGGSSDPSARAGLTTWETQA*STPRASWPSGLCQVVLDGS 552 NELS R+ M SK+ SGS WYG DR YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNR ++ + S W L GALG + AVW + G S A GL + ++ CQV+L G+ Sbjct: 21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNR-------ELEVIHSRWAML-GALGCVTPELLAKNGVKFGEAVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170 HSP 2 Score: 85.1149 bits (209), Expect = 3.472e-16 Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + F+EGGLDYLGNPSL+HAQSILAIWA L + +AG LGEV DP+YPGGSFDP+G+ Sbjct: 124 KFGEA-VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVIL-MGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGL 199
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.002e-23 Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1 Query: 121 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGS 444 NGGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR L++ H + + G + P+ S + V+ AVW + GS Sbjct: 31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-----ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS 135 HSP 2 Score: 76.2554 bits (186), Expect = 1.613e-13 Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + FSEGGLDYLGNP+LIHAQSILA+WA L + + G LGE D +YPGG+FDP+G+ Sbjct: 124 KFGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVL-MGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.533e-23 Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 124 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444 GGR++MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR + +G+ P L + + AVW + GS Sbjct: 4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILS-KNGVTFGEAVWFKAGS 107 HSP 2 Score: 74.3294 bits (181), Expect = 6.129e-13 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 411 FGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 FGE V + + FSEGGLDYLGNP+LIHAQSILAIWA L G+ + + G LGE D +YPGG+FDP+G+ Sbjct: 97 FGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 171
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.455e-22 Identity = 67/134 (50.00%), Postives = 82/134 (61.19%), Query Frame = 1 Query: 73 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGS 444 FVG+AV S NE GRI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR L++ H + + G + P+ S + V+ AVW + GS Sbjct: 11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-----ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS 135 HSP 2 Score: 76.2554 bits (186), Expect = 1.613e-13 Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + FSEGGLDYLGNP+L+HAQSILAIWA L G+ + + G LGE D +YPGG+FDP+G+ Sbjct: 124 KFGEA-VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22 Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 124 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444 GGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR + +G+ P L + + AVW + GS Sbjct: 32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILS-KNGVTFGEAVWFKAGS 135 HSP 2 Score: 74.7146 bits (182), Expect = 4.693e-13 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 411 FGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 FGE V + + FSEGGLDYLGNP+LIHAQSILAIWA L G+ + + G LGE D +YPGG+FDP+G+ Sbjct: 125 FGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22 Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 1 Query: 127 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG---PQ-RSPSSVR---AVWVQGGS 444 GR SMR+T K+V S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNR ++ + S W L GALG P+ S + V+ AVW + G+ Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR-------ELEVIHSRWAML-GALGCIFPELLSKNGVQFGEAVWFKAGA 134 HSP 2 Score: 79.337 bits (194), Expect = 1.905e-14 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 +FGE V + + FSEGGLDYLGNP+L+HAQSILAIWA L + + G LGE DPLYPGG+FDP+G+ Sbjct: 123 QFGEA-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVL-MGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGL 198
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22 Identity = 59/112 (52.68%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 130 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG-------PQRSPSSVRAVWVQGGS 444 R +MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR ++ + S W L GALG + AVW + GS Sbjct: 34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNR-------ELEVIHSRWAML-GALGCTFPELLEKNGVKFGEAVWFKAGS 135 HSP 2 Score: 79.337 bits (194), Expect = 1.905e-14 Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641 KFGE V + + F+EGGLDYLGNP+LIHAQSILAIWA L G+ + + G LGE DPLYPGG+FDP+G+ Sbjct: 124 KFGEA-VWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGF--VEGYRVGGGPLGEGLDPLYPGGAFDPLGL 199
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.102e-21 Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 73 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444 F+G+ N P + ++ G ++ S WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR + +G+ P L VW + GS Sbjct: 19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS 134 HSP 2 Score: 68.9366 bits (167), Expect = 2.575e-11 Identity = 49/110 (44.55%), Postives = 56/110 (50.91%), Query Frame = 2 Query: 326 LEVIHCRWAMLGALGCVFPELLARNGVQVR*GPCGFKAGAQILQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRNCWXAXR*SD*PIVPRWQL*SHWGLADDP 655 LEVIH RWAMLGALGC+FPE+L + P FKAG+QI G LG P L L LGF + MG VEG+R + P Q GLADDP Sbjct: 95 LEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP 203 The following BLAST results are available for this feature:
BLAST of CF417151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417151 ID=CF417151; Name=CF417151; organism=Citrus sinensis; type=EST; length=656bpback to top |