CF417151

Overview
NameCF417151
Unique NameCF417151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.652e-24
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   97 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG---PQ-RSPSSVR---AVWVQGGS 444
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR       ++  + S W  L GALG   P+  S + V+   AVW + G+
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-------ELEVIHSRWAML-GALGCVFPEILSKNGVKFGEAVWFKAGA 133          

HSP 2 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + FSEGGLDYLGNP+L+HAQSILAIWA+   L G+  +    + G  LGE  D +YPGG+FDP+G+
Sbjct:  122 KFGEA-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGF--VEGYRVGGGPLGEGLDKVYPGGAFDPLGL 197          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 67/145 (46.21%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  130 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGSSDPSARAGLTTWETQA*STPRASWPSGLCQVVLDGS 552
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NR      L++ H   + +   G L P+  + S V+   AVW + G+   S   GL      +    ++      CQVVL G+
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNR-----ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFS-EGGLDYLGNPSLVHAQSILAIWACQVVLMGA 173          

HSP 2 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 48/78 (61.54%), Postives = 56/78 (71.79%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + FSEGGLDYLGNPSL+HAQSILAIWA    L    +    +AG  LGEVTDP+YPGGSFDP+G+
Sbjct:  127 KFGEA-VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVL-MGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGL 202          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23
Identity = 73/160 (45.62%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  109 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG-------PQRSPSSVRAVWVQGGSSDPSARAGLTTWETQA*STPRASWPSGLCQVVLDGS 552
            NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNR       ++  + S W  L GALG        +       AVW + G S   A  GL      +    ++      CQV+L G+
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNR-------ELEVIHSRWAML-GALGCVTPELLAKNGVKFGEAVWFKAG-SQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGA 170          

HSP 2 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 46/78 (58.97%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + F+EGGLDYLGNPSL+HAQSILAIWA    L    +    +AG  LGEV DP+YPGGSFDP+G+
Sbjct:  124 KFGEA-VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVIL-MGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGL 199          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.002e-23
Identity = 60/112 (53.57%), Postives = 74/112 (66.07%), Query Frame = 1
Query:  121 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGS 444
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR      L++ H   + +   G + P+  S + V+   AVW + GS
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-----ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS 135          

HSP 2 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + FSEGGLDYLGNP+LIHAQSILA+WA    L    +    + G  LGE  D +YPGG+FDP+G+
Sbjct:  124 KFGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVL-MGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.533e-23
Identity = 56/107 (52.34%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  124 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR       +   +G+     P  L  +   +   AVW + GS
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILS-KNGVTFGEAVWFKAGS 107          

HSP 2 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  411 FGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            FGE  V  +   + FSEGGLDYLGNP+LIHAQSILAIWA    L G+  +    + G  LGE  D +YPGG+FDP+G+
Sbjct:   97 FGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 171          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.455e-22
Identity = 67/134 (50.00%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   73 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQ-RSPSSVR---AVWVQGGS 444
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR      L++ H   + +   G + P+  S + V+   AVW + GS
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNR-----ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGS 135          

HSP 2 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + FSEGGLDYLGNP+L+HAQSILAIWA    L G+  +    + G  LGE  D +YPGG+FDP+G+
Sbjct:  124 KFGEA-VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.483e-22
Identity = 56/107 (52.34%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  124 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444
            GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR       +   +G+     P  L  +   +   AVW + GS
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILS-KNGVTFGEAVWFKAGS 135          

HSP 2 Score: 74.7146 bits (182), Expect = 4.693e-13
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  411 FGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            FGE  V  +   + FSEGGLDYLGNP+LIHAQSILAIWA    L G+  +    + G  LGE  D +YPGG+FDP+G+
Sbjct:  125 FGEA-VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGF--VEGYRVGGGPLGEGLDKIYPGGAFDPLGL 199          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  127 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG---PQ-RSPSSVR---AVWVQGGS 444
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNR       ++  + S W  L GALG   P+  S + V+   AVW + G+
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNR-------ELEVIHSRWAML-GALGCIFPELLSKNGVQFGEAVWFKAGA 134          

HSP 2 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGLGWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            +FGE  V  +   + FSEGGLDYLGNP+L+HAQSILAIWA    L    +    + G  LGE  DPLYPGG+FDP+G+
Sbjct:  123 QFGEA-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVL-MGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGL 198          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 59/112 (52.68%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  130 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALG-------PQRSPSSVRAVWVQGGS 444
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NR       ++  + S W  L GALG        +       AVW + GS
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNR-------ELEVIHSRWAML-GALGCTFPELLEKNGVKFGEAVWFKAGS 135          

HSP 2 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  408 KFGEGRVGSRRELRSFSEGGLDYLGNPSLIHAQSILAIWALPGGL-GWEPLRVTEIAGXRLGEVTDPLYPGGSFDPIGV 641
            KFGE  V  +   + F+EGGLDYLGNP+LIHAQSILAIWA    L G+  +    + G  LGE  DPLYPGG+FDP+G+
Sbjct:  124 KFGEA-VWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGF--VEGYRVGGGPLGEGLDPLYPGGAFDPLGL 199          
BLAST of CF417151 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.102e-21
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   73 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRXTRSHPLQMGHVGSSWMRLPGALGPQRSPSSVRAVWVQGGS 444
            F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR       +   +G+     P  L           VW + GS
Sbjct:   19 FLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS 134          

HSP 2 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 49/110 (44.55%), Postives = 56/110 (50.91%), Query Frame = 2
Query:  326 LEVIHCRWAMLGALGCVFPELLARNGVQVR*GPCGFKAGAQILQRGRA*LLGKPKLDPRPEHLGHLGFARWSWMGAVEGYRNCWXAXR*SD*PIVPRWQL*SHWGLADDP 655
            LEVIH RWAMLGALGC+FPE+L +        P  FKAG+QI   G    LG P L      L  LGF +   MG VEG+R            + P  Q     GLADDP
Sbjct:   95 LEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGF-QVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDP 203          
The following BLAST results are available for this feature:
BLAST of CF417151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_ORYSI2.652e-2453.13Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_PHYPA7.717e-2446.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU2.245e-2345.63Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_TOBAC5.002e-2353.57Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_SOLLC8.533e-2352.34Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC1.455e-2250.00Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP2.483e-2252.34Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_LEMGI5.531e-2256.64Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA5.531e-2252.68Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC2.102e-2144.35Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-081 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417151 ID=CF417151; Name=CF417151; organism=Citrus sinensis; type=EST; length=656bp
CTTGCTTGCACAACTTCTGCTTCTCCATTAAATTCCGCAATGGCAACCTC
AACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCC
CTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACC
GGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGT
CAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTG
AGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCA
GAAACCTTTGCCAAGAACCGTGNAACTCGAAGTCATCCACTGCAGATGGG
CCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAAC
GGAGTCCAAGTTCGGTGAGGGCCGTGTGGGTTCAAGGCGGGAGCTCAGAT
CCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCAC
GCCCAGAGCATCTTGGCCATCTGGGCTTTGCCAGGTGGTCTTGGATGGGA
GCCGTTGAGGGTTACAGAAATTGCTGGANGGCGNCTCGGTGAAGTGACTG
ACCCATTGTACCCAGGTGGCAGCTTTGATCCCATTGGGGTTTGGCTGATG
ACCCGG
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