CF417153

Overview
NameCF417153
Unique NameCF417153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:37..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 63/113 (55.75%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            RDPFR+G NILVMCD Y P GEPIP+NKRH AAKIFSH DV AEEPW        L  ++    PLGW    L++              K +GRDIVD  YKACLYAGI+ISG
Sbjct:   79 RDPFRKGQNILVMCDCYEPNGEPIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLL-QKDTKWPLGWP---LAYPGPQGPYYCAAGADKSYGRDIVDCAYKACLYAGIDISG 187          

HSP 2 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            T KIIAEYIW+GGSGMD+RSKARTL GPV DPSKLPKWN+DGSSTGQAPG+D        + F+        I ++C       E      K     +  +   +  +   +GIEQEYTLL
Sbjct:   16 TGKIIAEYIWVGGSGMDVRSKARTLSGPVDDPSKLPKWNFDGSSTGQAPGDDSEVILCPRAIFRDPFRKGQNILVMCDCYEPNGE-PIPSNKRHGAAKIFSHPDVKAEEPWFGIEQEYTLL 135          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_DROME (Glutamine synthetase 2 cytoplasmic OS=Drosophila melanogaster GN=Gs2 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.059e-25
Identity = 50/115 (43.48%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGI--HLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFRRGNNILVMCD Y   G P  TNKR    ++   +   AEEPW     GI    T       PLGW      +              K + RDIVD+HY+ACLYAGI +SG
Sbjct:   92 KDPFRRGNNILVMCDTYKFDGTPTDTNKRKTCLEV--ANKCAAEEPWF----GIEQEYTFLDFDGHPLGWPKN--GFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSG 198          

HSP 2 Score: 54.6842 bits (130), Expect = 1.059e-25
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  187 AEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            A Y+WI G+G D+R K RTL      P +LP WNYDGSS  QA G +
Sbjct:   34 ATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSSCYQAEGSN 80          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25
Identity = 61/113 (53.98%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILVMCD YTP GEPIPTNKR+ AAKI S+ DV  EEPW        L  ++ +N PLGW      +              K +GRDIVDSHYKACL+ G+NISG
Sbjct:   79 KDPFREGNNILVMCDCYTPRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLL-QKDINWPLGWPVG--GFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISG 188          

HSP 2 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 62/121 (51.24%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            T+KIIAEYIWIGGSGMD+RSKAR LPGPV+ PSKLPKWNYDGSSTGQAPGED        +  +        I ++C   T  R       K     +  +   +  +   YGIEQEYTLL
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARHLPGPVTHPSKLPKWNYDGSSTGQAPGEDSEVILYPQAILKDPFREGNNILVMCDCYT-PRGEPIPTNKRYNAAKILSNPDVAKEEPWYGIEQEYTLL 135          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 63/113 (55.75%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFRRGN+ILVMCDAYTPAGEPIPTNKR AAAKIFS+ +V  E  W        L  ++  N PLGW      +              K +GRDIVD+HYKACLYAG+NISG
Sbjct:   79 KDPFRRGNHILVMCDAYTPAGEPIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLL-QKDTNWPLGWPLG--GFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISG 188          

HSP 2 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 65/121 (53.72%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TDKIIAEYIWIGGSGMD+RSKARTL GPVSDPS+LPKWNYDGSSTGQAPGED        + F+        I ++C   T   E      K     +  +   +  +   YGIEQEYTLL
Sbjct:   16 TDKIIAEYIWIGGSGMDLRSKARTLSGPVSDPSELPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNHILVMCDAYTPAGE-PIPTNKRAAAAKIFSNPEVEKEVTWYGIEQEYTLL 135          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 61/113 (53.98%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILV+CDAYTPAGEPIPTNKRH AA++FS+  V+AE PW        L  +  +N PLGW      +              K +GRDI D+HYKACL+AGINISG
Sbjct:  136 KDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVFSNPRVIAEVPWFGIEQEYTLL-QTNVNWPLGWPVG--GYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISG 245          

HSP 2 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 61/126 (48.41%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRE-----NQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E      + +  +    PR  A +  W     +GIEQEYTLL
Sbjct:   73 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEVFSNPRVIAEVP-W-----FGIEQEYTLL 192          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.147e-25
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 3
Query:  357 FSRDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            F  DPFRRG+NI V+ + +   G P   N RH A K+F +H D   EE  +W+      T   M +    W      + +            K + RD++++HY+ACLYAGINISG
Sbjct:   81 FYPDPFRRGDNITVLAECFNSDGTPNKFNHRHEANKLFQAHKD---EE--IWFGIEQEYTLFDMYDNVYAWPKG--GYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISG 189          

HSP 2 Score: 65.855 bits (159), Expect = 5.147e-25
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:  178 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            K+IAEY+W+ G+G ++RSKARTL   ++   +LP+WN+DGSST QAPG D
Sbjct:   23 KVIAEYVWVDGTG-NLRSKARTLNKVITSIEQLPEWNFDGSSTNQAPGYD 71          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 61/113 (53.98%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILVMCD YTPAGEPIPTNKR+ AA++FS   VV++ PW        L  +R +N PLGW      +              K +GRDI D+HYKACLYAGINISG
Sbjct:  135 KDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVVSQVPWFGIEQEYTLL-QRDVNWPLGWPVG--GYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISG 244          

HSP 2 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TDKIIAEYIW+GG+G+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E      ++     FS   ++  +   +GIEQEYTLL
Sbjct:   72 TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAAQVFSDPKVV-SQVPWFGIEQEYTLL 191          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR+GNNILVMCDAY PAG+PIPTN RH A KIF H +V AEEPW        L  ++ +  PLGW      +              K +GRDIVD+HYKACLY+G++I G
Sbjct:   79 KDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKAEEPWFGIEQEYTLL-KKDVKWPLGWPLG--GFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGG 188          

HSP 2 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 61/126 (48.41%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVML-----TLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            T KIIAEYIWIGGSGMD+RSKARTLPGPVS+P+KLPKWNYDGSST QA G+D        + F+        I ++C         +   N+ +  K    P   A      +   +GIEQEYTLL
Sbjct:   16 TKKIIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIFKDPFRKGNNILVMCDAYRPAGDPIPTNNRHKAVKIFDHPNVKA------EEPWFGIEQEYTLL 135          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.719e-25
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFRRG+NI+V+   Y   G P   N RH AAK+F +H D   EE  +W+      T   M +   GW      + +            K + RD++++HY+ACLYAG+ ISG
Sbjct:   84 DPFRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHKD---EE--IWFGLEQEYTLFDMYDDVYGWPKG--GYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISG 189          

HSP 2 Score: 65.0846 bits (157), Expect = 8.719e-25
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  178 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            +IIAEY+WI G+G ++RSK RTL   ++   +LP+WN+DGSST QAPG D
Sbjct:   23 RIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHD 71          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 62/113 (54.87%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            RDPFR GNNILV+CD YTPAGEPIPTNKR  AA+IFS+  V  E PW        L  +  +N PLGW     ++              K WGRDI D+HYKACLYAGINISG
Sbjct:  135 RDPFRGGNNILVICDTYTPAGEPIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLL-QPNVNWPLGWPVG--AYPGPQGPYYCGVGAEKSWGRDISDAHYKACLYAGINISG 244          

HSP 2 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 60/121 (49.59%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TD+IIAEYIWIGGSG+D+RSK+RTL  PV DPS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E      K  +     +   +  +   +GIEQEYTLL
Sbjct:   72 TDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGE-PIPTNKRARAAEIFSNKKVNEEIPWFGIEQEYTLL 191          
The following BLAST results are available for this feature:
BLAST of CF417153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GLNA2_MAIZE5.449e-2655.75Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLNA2_DROME1.059e-2543.48Glutamine synthetase 2 cytoplasmic OS=Drosophila m... [more]
GLNA3_HORVU1.214e-2553.98Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA_LACSA2.071e-2555.75Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA4_PHAVU2.071e-2553.98Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_CANGA5.147e-2536.21Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA2_ORYSJ6.025e-2553.98Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLN15_ARATH7.869e-2551.33Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA_YEAST8.719e-2537.17Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNAC_BRANA1.028e-2454.87Glutamine synthetase, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-083 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417153 ID=CF417153; Name=CF417153; organism=Citrus sinensis; type=EST; length=701bp
ATAAAAGCCAGGCAACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCAC
ATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGTG
TTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTT
AACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATATG
GATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCG
GTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCC
AGCACAGGCCAAGCACCTGGAGAAGATTAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGGATCCATTCAGGAGAGGCAACAATATTCTTGTTAT
GTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGAC
ATGCAGCTGCCAAGATTTTCAGCCATTCTGATGTTGTGGCTGAAGAACCA
TGGGTATGGTATTGAGCAGGAATACACCTTACTGGCAGAAGGATGTTAAA
TGGCCCTCTTGGCTGGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCA
TACNTACNNGGGGGGGGTTGGTGCTGACAAAGNCTTGGGGGCGTGACATT
GTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGG
A
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