CF417153

Overview
NameCF417153
Unique NameCF417153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:37..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 61/113 (53.98%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILV+CDAYTPAGEPIPTNKRH AA+IFS+  V AE PW        L  +  +  PLGW      +              K +GRDI D+HYKAC+YAGINISG
Sbjct:  137 KDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIPWYGIEQEYTLL-QTNVKWPLGWPVG--GYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISG 246          

HSP 2 Score: 102.449 bits (254), Expect = 2.369e-21
Identity = 60/126 (47.62%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRE-----NQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TD IIAEYIWIGG+G+D+RSK+RT+  PVS PS++PKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E      + +  +    P+  A +  W     YGIEQEYTLL
Sbjct:   74 TDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRHRAAEIFSNPKVEAEIP-W-----YGIEQEYTLL 193          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS + V+ E PW        L  ++ +N PLGW      +              K +GRDI D+HYKACLYAGINISG
Sbjct:  139 KDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVLGEVPWFGIEQEYTLM-QQDVNWPLGWNVG--GYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISG 248          

HSP 2 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLLAE 540
            TDKIIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPG+D        + F+    G   I ++C   T   E      +      FS   +L  +   +GIEQEYTL+ +
Sbjct:   76 TDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHKAAQIFSDAKVLG-EVPWFGIEQEYTLMQQ 197          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.255e-24
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 3
Query:  357 FSRDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            F  DPFRRG+NI+V+ + +   G P   N RH AAK+F +H D       +W+      T     +   GW      + +            K + RD++++HY+ACLYAG+NISG
Sbjct:   83 FYPDPFRRGDNIVVLAECWNNDGTPNKFNHRHEAAKLFEAHKDAE-----MWFGLEQEYTLFDQYDQVYGWPKG--GFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISG 191          

HSP 2 Score: 63.5438 bits (153), Expect = 3.255e-24
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  181 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            IIAEY+WI   G  +RSK RTL   V+    LP+WN+DGSSTGQAPG D
Sbjct:   26 IIAEYVWIDSEG-GLRSKGRTLNKKVTSVDSLPEWNFDGSSTGQAPGHD 73          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 61/113 (53.98%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILV+CDAYTP GEPIPTNKRH AA+IFS+  V AE PW        L  +  +  PLGW      +              K +GRDI D+HYKACLYAGINISG
Sbjct:  135 KDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLL-QTDVKWPLGWPVG--GYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISG 244          

HSP 2 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 59/126 (46.83%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLT-----LLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TD IIAEYIWIGG+G+D+RSK+RT+  PV  PS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T     +    + +  +    P+  A +  W     YGIEQEYTLL
Sbjct:   72 TDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIP-W-----YGIEQEYTLL 191          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 60/113 (53.10%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            RDPFR GNNILV+CD +TPAGEPIPTNKR  AA+IFS+  V  E PW        L  ++ +  PLGW     ++              K WGRDI D+HYKACLYAGINISG
Sbjct:  137 RDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPWFGIEQEYTLL-QQNVKWPLGWPVG--AFPGPQGPYYCGVGADKIWGRDISDAHYKACLYAGINISG 246          

HSP 2 Score: 103.219 bits (256), Expect = 1.389e-21
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRE----NQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLLAE 540
            +D+IIAEYIWIGGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E    N+  +  ++   +  +  + W     +GIEQEYTLL +
Sbjct:   74 SDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRAKAAEIFSNKKVSGEVPW-----FGIEQEYTLLQQ 195          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNNILV+CD YTP GEPIPTNKRH AA+IFS   V ++ PW        L  +R +N PLGW      +              K +GRDI D+HYKACLYAGI ISG
Sbjct:  141 KDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPWFGIEQEYTLM-QRDVNWPLGWPVG--GYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISG 250          

HSP 2 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFS----AILMLWLKNHGYGIEQEYTLL 534
            TDKIIAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGED        + F+    G   I ++C   T   E      + M    FS       + W     +GIEQEYTL+
Sbjct:   78 TDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRHMAAQIFSDPKVTSQVPW-----FGIEQEYTLM 197          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.639e-23
Identity = 57/113 (50.44%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR GNN+LV+CD YTP GEP+PTNKRH AA+IFS   V  + PW        L  ++ +N PLGW      +              K +GRDI D+HYKACLYAGINISG
Sbjct:  130 KDPFRGGNNVLVICDTYTPQGEPLPTNKRHRAAQIFSDPKVGEQVPWFGIEQEYTLL-QKDVNWPLGWPVG--GFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISG 239          

HSP 2 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 57/121 (47.11%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  172 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED**SDPLSSSYFQGIHSGEATIFLLCVMLTLLRENQFQQTKDMQLPRFSAILMLWLKNHGYGIEQEYTLL 534
            TDK+IAEYIW+GGSG+D+RSK+RT+  PV DPS+LPKWNYDGSSTGQAPGED        + F+    G   + ++C   T   E      K  +  +  +   +  +   +GIEQEYTLL
Sbjct:   67 TDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGE-PLPTNKRHRAAQIFSDPKVGEQVPWFGIEQEYTLL 186          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_ASHGO (Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.896e-23
Identity = 38/115 (33.04%), Postives = 55/115 (47.83%), Query Frame = 3
Query:  357 FSRDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            F  DPFRRG+NI+V+ + +   G P   N RH AAK+F           +W+      T     +   GW      + +            K + RD+V++HY+ACLYAG+ ISG
Sbjct:   80 FYPDPFRRGDNIIVLAECWNNDGTPNKYNHRHEAAKLFEAHRAAD----IWFGLEQEYTLFDHNDNVYGWPKG--GFPAPQGPYYCGVGAGKVYARDVVEAHYRACLYAGLRISG 188          

HSP 2 Score: 63.5438 bits (153), Expect = 5.896e-23
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  181 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            +IAEYIW+  +G  +RSK RTL   V    +LP+WN+DGSSTGQAPG D
Sbjct:   23 VIAEYIWVDSAG-HLRSKGRTLQRRVESVDELPEWNFDGSSTGQAPGHD 70          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.899e-23
Identity = 42/113 (37.17%), Postives = 56/113 (49.56%), Query Frame = 3
Query:  366 DPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF-SHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            DPFR G+NILV+ + +   G P   N RH  AKI  +H D   ++PW  +      T   +   P GW      +              K + RDIV++HYKACL+AGI ISG
Sbjct:   86 DPFRMGDNILVLAECWNADGSPNKFNHRHECAKIMEAHKD---QKPW--FGLEQEYTLFDLYGNPYGWPKG--GFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISG 191          

HSP 2 Score: 61.6178 bits (148), Expect = 5.899e-23
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:  181 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            I+AEYIWI G+   +RSK +TL    S    LP+WN+DGSSTGQAPGED
Sbjct:   26 ILAEYIWIDGAN-GVRSKTKTLFKKPSSVEDLPEWNFDGSSTGQAPGED 73          
BLAST of CF417153 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.991e-23
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 3
Query:  363 RDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHSDVVAEEPWVWY*AGIHLTGRRMLNGPLGWAHRWLSWASXXXXXXXXXXXXKXWGRDIVDSHYKACLYAGINISG 701
            +DPFR G+NILV+ + Y   G P  TN RH A K+F      A+E   W+      T     + P GW      +              K + RD++++HY+ACLYAGINISG
Sbjct:   81 KDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVFDE----AKEHEPWFGLEQEYTLFDADDQPYGWPKG--GFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISG 187          

HSP 2 Score: 55.4546 bits (132), Expect = 9.991e-23
Identity = 27/51 (52.94%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  175 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGED 327
            DKI AEY+WI G G  +R K  T+   V+D  +L  W++DGSST QAPG D
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHD 69          
The following BLAST results are available for this feature:
BLAST of CF417153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GLNA2_PEA1.753e-2453.98Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA2.290e-2453.10Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA_KLULA3.255e-2434.48Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA2_MEDSA5.101e-2453.98Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH5.101e-2453.10Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNA2_HORVU1.136e-2352.21Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE5.639e-2350.44Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA_ASHGO5.896e-2333.04Glutamine synthetase OS=Ashbya gossypii GN=GLN1 PE... [more]
GLNA_TUBBO5.899e-2337.17Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_AGABI9.991e-2337.17Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-083 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_A4 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417153 ID=CF417153; Name=CF417153; organism=Citrus sinensis; type=EST; length=701bp
ATAAAAGCCAGGCAACAACAGCCTCCTCCGTTCACGTCTCTGTGTAGCAC
ATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTTTCTTTGTTGTG
TTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCTCAGATCTCCTT
AACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCTGAGTACATATG
GATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAGGACTCTTCCCG
GTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATTATGATGGTTCC
AGCACAGGCCAAGCACCTGGAGAAGATTAGTGAAGTGATCCTCTATCCTC
AAGCTATTTTCAAGGGATCCATTCAGGAGAGGCAACAATATTCTTGTTAT
GTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAAACAAAAGAC
ATGCAGCTGCCAAGATTTTCAGCCATTCTGATGTTGTGGCTGAAGAACCA
TGGGTATGGTATTGAGCAGGAATACACCTTACTGGCAGAAGGATGTTAAA
TGGCCCTCTTGGCTGGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCA
TACNTACNNGGGGGGGGTTGGTGCTGACAAAGNCTTGGGGGCGTGACATT
GTGGACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGG
A
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