CF417160

Overview
NameCF417160
Unique NameCF417160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1647 contig Csv1_Contig1647:171..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 88/227 (38.77%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEV-PCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ES+WV SDW K++  +G+  +TAGKW GD N KGIQTSED RFYA+SA+FP FSNK K   V  +     +   CGG Y+KLL   S  +++        S +    V  A ++    L   G+ +  KKE+   ETDQLTH YT ++ PD TY +L+DN E Q             K  +   +Q                     G+DDIP  I DP+A KP+DW
Sbjct:   32 ESRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDL-VLQYTVKNEQKVDCGGSYIKLL--PSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNLADDWELLPSKQIKDP-KQSKPVDWVDVKEIDDPEDVKPAGHDDIPASIVDPEAVKPEDW 254          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.344e-25
Identity = 79/229 (34.50%), Postives = 107/229 (46.72%), Query Frame = 1
Query:    7 QWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVV-IAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID---NAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            +W KS WK  + +AGE+  TAGKW GD   DKGIQT  D +F+AISA      +      V  F     +   CGGGY+K++   S  +          S +    +   + RK    L   G+    KK++  ETDQLTHVYT +++PD TY +LID    A                KD + S  ++      +R            G+DDIP  I D DAKKP+DW
Sbjct:   33 RWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPPKTIKDPKASKPED----WDEREEIADPEDKKPEGWDDIPATIADKDAKKPEDW 257          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 76/241 (31.54%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            S+W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P ++   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   S  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 SRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF-------------PNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 76/241 (31.54%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            S+W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P ++   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   S  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 SRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF-------------PNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 76/241 (31.54%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            S+W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P ++   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   S  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 SRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF-------------PNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 76/241 (31.54%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            S+W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P ++   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   S  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 SRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF-------------PNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 77/244 (31.56%), Postives = 114/244 (46.72%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQ--------ISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ++WV+S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA+F  FSNK +T  V  F     +   CGGGY+KL                  S LDQ         +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   +  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 NRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF----------------PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 75/241 (31.12%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ++WV+S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P ++   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   +  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 NRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLF-------------PGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 73/236 (30.93%), Postives = 113/236 (47.88%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            ++WV+S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL       ++        +    + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   +  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   35 NRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQ-FTVKHEQNIDCGGGYVKLFPGGLDQKD--------MHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 72/235 (30.64%), Postives = 106/235 (45.11%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIP-KEITDPDAKKPDDW 678
            ES WV S+    E   G++  TAGK+  DP +DKG++TSED RFYA+S +F  FSN+ K   V  F     +   CGGGY+K+   +   ++     P          ++  P  C P            G+ +  KK++ C+ D  TH+YT I++PD TY +LIDN + +                                            +D +P K+I DP+AKKP+DW
Sbjct:   33 ESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQ-FTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPY--------EIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVE-------------------------------------SGDLEADWDFLPNKKIKDPEAKKPEDW 219          
The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALR_DICDI6.919e-3138.77Calreticulin OS=Dictyostelium discoideum GN=crtA P... [more]
CALR_CHLRE4.344e-2534.50Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
CALR_MACFU4.208e-2031.54Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=... [more]
CALR_MACFA4.208e-2031.54Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S... [more]
CALR_HUMAN4.208e-2031.54Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
CALR_CERAE4.208e-2031.54Calreticulin OS=Cercopithecus aethiops GN=CALR PE=... [more]
CALR_MOUSE2.088e-1931.56Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1[more]
CALR_CRIGR2.727e-1931.12Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV... [more]
CALR_RAT6.076e-1930.93Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=... [more]
CALR_BOMMO7.935e-1930.64Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-090 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bp
GAAAGCCAGTGGGTTAAATCTGATTGGAAGAAAGATGAGAACACGGCTGG
AGAATGGAACTACACTGCCGGGAAATGGAATGGGGACCCGAATGATAAAG
GTATTCAAACTAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAATTC
CCTGAATTCAGCAACAAGGACAAGACACNTCGTGTTCCAGTTTTCTGTTA
AGCATGAACAGAAGCTTGGACCTGTGGTGGTGGCTACATGAAGTTGCTTT
AGTGGCGAAGTTGATCAGAAGAAAATTTGGTGGTGATACCCCTTACAGTA
TCATGTTTGGACCAGATATCTGTGGTTATAGCACCAAGAAAGTGCATGCC
ATTCTTACCTACAATGGGACAAACAAATTGATCCAAGAAGGAAGTACCAT
GTGAGACTGACCAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGAT
GCTACTTACAGCATCCTCATTGACAATGCGGAGAAACAATCTGGTAGCTT
GTACTCCTGATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGAC
GCCAAGAAACCTGAAGACTGGGATGACAAAGAATATATTCCCGATCCTGA
AGACAAGNAAGCCAGAGGGGCTATGATGACATTCCAAAGGAGATAACAGA
TCCTGATGCCAAGAAGCCTGATGATTGGG
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