CF417160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18 Identity = 74/240 (30.83%), Postives = 111/240 (46.25%), Query Frame = 1 Query: 7 QWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 +W++S K D G++ ++GK+ GD DKG+QTS+D RFYA+SA F FSNK + V F + CGGGY+KL P + D + +++ P C P + G+ K++ C+ D+ TH+YT I+RPD TY + IDN++ + KD S ++ +R +D P+ I DPDAKKP+DW Sbjct: 36 RWIESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQ-FTVKHEQNIDCGGGYVKLF-------------PAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18 Identity = 73/240 (30.42%), Postives = 110/240 (45.83%), Query Frame = 1 Query: 7 QWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 +W++S K D G++ ++GK+ GD DKG+QTS+D RFYA+SA F FSNK +T V F + CGGGY+KL P + D + +++ P C P G+ K++ C+ D+ TH+YT I+RP+ TY + IDN++ + KD + ++ R +D P+ I DPDAKKP+DW Sbjct: 36 RWIESKHKPD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTL-VVQFTVKHEQNIDCGGGYVKL-------------FPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPED----WDDRAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18 Identity = 73/234 (31.20%), Postives = 111/234 (47.44%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 E +WV+S K D G + +AGK+ + + D+GIQTS+D +FY+ +A+F EFSNK KT + + + CGGGY+K++ + + P +V+ P C P L G+ KKE+ C++D+LTH+YT IL D TY + ID Q K + ++ +R Y ++ P+ I DPDAKKP+DW Sbjct: 29 EKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQ-YTVKHEQGIDCGGGYVKVMRGDADLADFHGETPY--------NVMFGPDICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWD-EREYIDDAEDVKPEDWEK-PEHIPDPDAKKPEDW 248
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17 Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEF-PEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 E +WV+S K D G + +AGK+ + + D+GIQTS+D +FY+ +A+F +FSNK KT V + + CGGGY+K++ R+ ++ + + + R+ L G+ KKE+ C++D+LTH+YT IL D TY + ID Q K + ++ +R Y ++ P+ I DPDAKKP+DW Sbjct: 29 EKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTL-VIQYTVKHEQGIDCGGGYVKVM--RADADLGDFHGETPYNVMFGPDICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWD-EREYIDDAEDAKPEDWEK-PEHIPDPDAKKPEDW 248
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 69/235 (29.36%), Postives = 108/235 (45.96%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 E +W+KS K D G+W + GK+ GD DKG++T++D +FY+I A+F + FSNK K+ V F + CGGGY+KL+ E++ P ++ P C P + + KK++ C+ D TH+YT I+ D TY + ID + + K + ++ +R + +D P+ I DPDAKKP+DW Sbjct: 31 EKRWIKSKHKDD---FGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSL-VIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETP--------YHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPKKIKDPDAKKPEDWD-EREFIDDEDDKKPEDWDK-PEHIPDPDAKKPEDW 251
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15 Identity = 70/225 (31.11%), Postives = 103/225 (45.78%), Query Frame = 1 Query: 10 WVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 WV+S + ++ GE+ AGK DP D G++T++D RFY I+ + E FSN+ KT V F + +CGG Y+KLL ++ P + I +A +K G+ + KKE+PC+ D TH+YT I+ P+ Y +L+DNA K +GS + L PK+I DP+ KKPDDW Sbjct: 33 WVQSTYNAEKQ--GEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTM-VLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDI-CGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNA----------------KVEEGSLEDDWDMLP--------------------PKKIDDPNDKKPDDW 217
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15 Identity = 72/232 (31.03%), Postives = 101/232 (43.53%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEF-PEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQI----SVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 E++W S K D G++ T+GK+ GD D GIQTS+D +FYAIS+ FSN+ K V F + CGGGY+KLL ++ T I + A +K L G+ KKE CETD L+H YT +++ D TY +L+D +K+ K + +D P +I DPDA +PDDW Sbjct: 31 ETRWTHSTAKSDY---GKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDL-VLQFSVKHEQDIDCGGGYLKLL-------PSVDAAKFTGDTPYHIMFGPDICGATKKIHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPKTIPDP-EDKKPADWVDEPDMVDPEDKKPEDWDKEPAQIPDPDATQPDDW 250
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15 Identity = 70/234 (29.91%), Postives = 98/234 (41.88%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678 E W+ S K G++ T G + D DKGIQTS+D RFYA S +F FSN+DK V F + CGGGY+KL + + + ++ P C P G+ + K++ C+ D TH YT I+RPD TY +LIDN + + K + + R +D P+ I DPDA KP+DW Sbjct: 33 EDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQ-FSVKHEQNIDCGGGYVKLF--------DCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPKKIKDPTATKPEDWD-DRATIPDPDDKKPEDWDK-PEHIPDPDATKPEDW 253
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1) HSP 1 Score: 50.0618 bits (118), Expect = 2.705e-15 Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 2 Query: 404 RLTNSLMFILSSSVQMLLTASSLTMRRNNLVACTPDWD--LLPPKTIKDPDAKKPEDWDDKEYIPDPE 601 +LT+ ++ ++++ ++ N ++ + D++ L+P KTI DPD KKPEDWD++ IPDPE Sbjct: 182 KLTHVYTAVIKPDNELVILIDGEEKKKANFLS-SEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDPE 248 HSP 2 Score: 39.2762 bits (90), Expect = 2.705e-15 Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 3 Query: 276 FGGDTPYSIMFGPDICGYSTKKVHAILTY 362 F ++PYSIMFGPD CG +T KVH IL + Sbjct: 132 FDNESPYSIMFGPDKCG-ATNKVHFILKH 159 HSP 3 Score: 32.7278 bits (73), Expect = 2.705e-15 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 625 DDIPKEITDPDAKKPDDW 678 DD P+EI DP+A KP+DW Sbjct: 276 DDEPEEIDDPEAVKPEDW 293
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15 Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1 Query: 4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474 ++WV S +++ G + ++G + G DKG+QT+++ RFYAISA F FSNK KT + + + CGGGY+KL ++NL + Q ++ P C + T+ Q + +KK + C+ D TH+YT +LRPD TY + ID Sbjct: 35 NRWVHST---NDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARFKPFSNKGKTLIIQ-YTVKHEQKMDCGGGYIKLFP-ADVDQKNL-------NGKSQYYIMFGPDICGFDIKTVHVILHFKNQYHANKKSIRCKVDSFTHLYTLVLRPDLTYEVKID 187 The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bpback to top |