CF417160

Overview
NameCF417160
Unique NameCF417160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1647 contig Csv1_Contig1647:171..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_RABIT (Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 74/240 (30.83%), Postives = 111/240 (46.25%), Query Frame = 1
Query:    7 QWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            +W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +   V  F     +   CGGGY+KL              P  +   D     + +++  P  C P    +       G+     K++ C+ D+ TH+YT I+RPD TY + IDN++ +                KD   S  ++      +R             +D  P+ I DPDAKKP+DW
Sbjct:   36 RWIESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQPLVVQ-FTVKHEQNIDCGGGYVKLF-------------PAGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPED----WDERAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_BOVIN (Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 73/240 (30.42%), Postives = 110/240 (45.83%), Query Frame = 1
Query:    7 QWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLD-----QISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQ---XXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            +W++S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +T  V  F     +   CGGGY+KL              P  +   D     + +++  P  C P            G+     K++ C+ D+ TH+YT I+RP+ TY + IDN++ +                KD   +  ++       R             +D  P+ I DPDAKKP+DW
Sbjct:   36 RWIESKHKPD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTL-VVQFTVKHEQNIDCGGGYVKL-------------FPAGLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPNNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPED----WDDRAKIDDPTDSKPEDWDK-PEHIPDPDAKKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CAEBR (Calreticulin OS=Caenorhabditis briggsae GN=crt-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 73/234 (31.20%), Postives = 111/234 (47.44%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEFP-EFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E +WV+S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  EFSNK KT  +  +     +   CGGGY+K++   +   +     P         +V+  P  C P       L   G+    KKE+ C++D+LTH+YT IL  D TY + ID    Q             K  +    ++      +R Y           ++  P+ I DPDAKKP+DW
Sbjct:   29 EKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKEFSNKGKTLVIQ-YTVKHEQGIDCGGGYVKVMRGDADLADFHGETPY--------NVMFGPDICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNADNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWD-EREYIDDAEDVKPEDWEK-PEHIPDPDAKKPEDW 248          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_CAEEL (Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKW-NGDPNDKGIQTSEDYRFYAISAEF-PEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E +WV+S  K D    G +  +AGK+ + +  D+GIQTS+D +FY+ +A+F  +FSNK KT  V  +     +   CGGGY+K++  R+ ++          + +    +    R+    L   G+    KKE+ C++D+LTH+YT IL  D TY + ID    Q             K  +    ++      +R Y           ++  P+ I DPDAKKP+DW
Sbjct:   29 EKRWVQSKHKDD---FGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTL-VIQYTVKHEQGIDCGGGYVKVM--RADADLGDFHGETPYNVMFGPDICGPTRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGSLEEDWDLLPAKKIKDPDAKKPEDWD-EREYIDDAEDAKPEDWEK-PEHIPDPDAKKPEDW 248          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_ONCVO (Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 69/235 (29.36%), Postives = 108/235 (45.96%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E +W+KS  K D    G+W  + GK+ GD   DKG++T++D +FY+I A+F + FSNK K+  V  F     +   CGGGY+KL+      E++    P          ++  P  C P             + +  KK++ C+ D  TH+YT I+  D TY + ID  + +             K  +    ++      +R +           +D  P+ I DPDAKKP+DW
Sbjct:   31 EKRWIKSKHKDD---FGKWEISHGKFYGDAVKDKGLKTTQDAKFYSIGAKFDKSFSNKGKSL-VIQFSVKHEQDIDCGGGYVKLMASDVNLEDSHGETP--------YHIMFGPDICGPGTKKVHVIFHYKDRNHMIKKDIRCKDDVFTHLYTLIVNSDNTYEVQIDGEKAESGELEADWDFLPPKKIKDPDAKKPEDWD-EREFIDDEDDKKPEDWDK-PEHIPDPDAKKPEDW 251          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_SCHMA (Calreticulin OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 70/225 (31.11%), Postives = 103/225 (45.78%), Query Frame = 1
Query:   10 WVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            WV+S +  ++   GE+   AGK   DP  D G++T++D RFY I+ +  E FSN+ KT  V  F     +  +CGG Y+KLL      ++     P  +     I   +A +K        G+ +  KKE+PC+ D  TH+YT I+ P+  Y +L+DNA                K  +GS   +   L                     PK+I DP+ KKPDDW
Sbjct:   33 WVQSTYNAEKQ--GEFKVEAGKSPVDPIEDLGLKTTQDARFYGIARKISEPFSNRGKTM-VLQFTVKFDKTVSCGGAYIKLLGSDIDPKKFHGESPYKIMFGPDI-CGMATKKVHVIFNYKGKNHLIKKEIPCKDDLKTHLYTLIVNPNNKYEVLVDNA----------------KVEEGSLEDDWDMLP--------------------PKKIDDPNDKKPDDW 217          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_EUGGR (Calreticulin OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 72/232 (31.03%), Postives = 101/232 (43.53%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEF-PEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQI----SVVIAPRKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E++W  S  K D    G++  T+GK+ GD   D GIQTS+D +FYAIS+     FSN+ K   V  F     +   CGGGY+KLL        ++     T      I     +  A +K    L   G+    KKE  CETD L+H YT +++ D TY +L+D  +K+             K        +                     +D  P +I DPDA +PDDW
Sbjct:   31 ETRWTHSTAKSDY---GKFKLTSGKFYGDKAKDAGIQTSQDAKFYAISSPIASSFSNEGKDL-VLQFSVKHEQDIDCGGGYLKLL-------PSVDAAKFTGDTPYHIMFGPDICGATKKIHFILTYKGKNLLWKKEPRCETDTLSHTYTAVIKADRTYEVLVDQVKKESGTLEEDWEILKPKTIPDP-EDKKPADWVDEPDMVDPEDKKPEDWDKEPAQIPDPDATQPDDW 250          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR_DROME (Calreticulin OS=Drosophila melanogaster GN=Crc PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 70/234 (29.91%), Postives = 98/234 (41.88%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMP-------FLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILIDNAEKQXXXXXXXXXXXXXKDHQGS*RQET*RLG*QRIYXXXXXXXXXXGYDDIPKEITDPDAKKPDDW 678
            E  W+ S  K      G++  T G +  D   DKGIQTS+D RFYA S +F  FSN+DK   V  F     +   CGGGY+KL         +  +    +       ++  P  C P            G+ +   K++ C+ D  TH YT I+RPD TY +LIDN + +             K  +     +       R             +D  P+ I DPDA KP+DW
Sbjct:   33 EDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQ-FSVKHEQNIDCGGGYVKLF--------DCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDWDFLAPKKIKDPTATKPEDWD-DRATIPDPDDKKPEDWDK-PEHIPDPDATKPEDW 253          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_HELTU (Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 2.705e-15
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 2
Query:  404 RLTNSLMFILSSSVQMLLTASSLTMRRNNLVACTPDWD--LLPPKTIKDPDAKKPEDWDDKEYIPDPE 601
            +LT+    ++    ++++       ++ N ++ + D++  L+P KTI DPD KKPEDWD++  IPDPE
Sbjct:  182 KLTHVYTAVIKPDNELVILIDGEEKKKANFLS-SEDFEPALIPTKTIPDPDDKKPEDWDERAKIPDPE 248          

HSP 2 Score: 39.2762 bits (90), Expect = 2.705e-15
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 3
Query:  276 FGGDTPYSIMFGPDICGYSTKKVHAILTY 362
            F  ++PYSIMFGPD CG +T KVH IL +
Sbjct:  132 FDNESPYSIMFGPDKCG-ATNKVHFILKH 159          

HSP 3 Score: 32.7278 bits (73), Expect = 2.705e-15
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 DDIPKEITDPDAKKPDDW 678
            DD P+EI DP+A KP+DW
Sbjct:  276 DDEPEEIDDPEAVKPEDW 293          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_BOVIN (Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKCMPFLPTM-------GQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474
            ++WV S    +++  G +  ++G + G    DKG+QT+++ RFYAISA F  FSNK KT  +  +     +   CGGGY+KL       ++NL       +   Q  ++  P  C   + T+        Q + +KK + C+ D  TH+YT +LRPD TY + ID
Sbjct:   35 NRWVHST---NDSQFGHFRLSSGNFYGHKEKDKGLQTTQNSRFYAISARFKPFSNKGKTLIIQ-YTVKHEQKMDCGGGYIKLFP-ADVDQKNL-------NGKSQYYIMFGPDICGFDIKTVHVILHFKNQYHANKKSIRCKVDSFTHLYTLVLRPDLTYEVKID 187          
The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALR_RABIT1.036e-1830.83Calreticulin OS=Oryctolagus cuniculus GN=CALR PE=1... [more]
CALR_BOVIN3.015e-1830.42Calreticulin OS=Bos taurus GN=CALR PE=1 SV=2[more]
CALR_CAEBR8.773e-1831.20Calreticulin OS=Caenorhabditis briggsae GN=crt-1 P... [more]
CALR_CAEEL3.334e-1730.70Calreticulin OS=Caenorhabditis elegans GN=crt-1 PE... [more]
CALR_ONCVO2.161e-1629.36Calreticulin OS=Onchocerca volvulus GN=crt-1 PE=2 ... [more]
CALR_SCHMA1.829e-1531.11Calreticulin OS=Schistosoma mansoni PE=2 SV=2[more]
CALR_EUGGR1.829e-1531.03Calreticulin OS=Euglena gracilis PE=2 SV=1[more]
CALR_DROME1.829e-1529.91Calreticulin OS=Drosophila melanogaster GN=Crc PE=... [more]
CALX_HELTU2.705e-1535.29Calnexin homolog OS=Helianthus tuberosus PE=2 SV=1[more]
CALR3_BOVIN6.952e-1533.33Calreticulin-3 OS=Bos taurus GN=CALR3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-090 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bp
GAAAGCCAGTGGGTTAAATCTGATTGGAAGAAAGATGAGAACACGGCTGG
AGAATGGAACTACACTGCCGGGAAATGGAATGGGGACCCGAATGATAAAG
GTATTCAAACTAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAATTC
CCTGAATTCAGCAACAAGGACAAGACACNTCGTGTTCCAGTTTTCTGTTA
AGCATGAACAGAAGCTTGGACCTGTGGTGGTGGCTACATGAAGTTGCTTT
AGTGGCGAAGTTGATCAGAAGAAAATTTGGTGGTGATACCCCTTACAGTA
TCATGTTTGGACCAGATATCTGTGGTTATAGCACCAAGAAAGTGCATGCC
ATTCTTACCTACAATGGGACAAACAAATTGATCCAAGAAGGAAGTACCAT
GTGAGACTGACCAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGAT
GCTACTTACAGCATCCTCATTGACAATGCGGAGAAACAATCTGGTAGCTT
GTACTCCTGATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGAC
GCCAAGAAACCTGAAGACTGGGATGACAAAGAATATATTCCCGATCCTGA
AGACAAGNAAGCCAGAGGGGCTATGATGACATTCCAAAGGAGATAACAGA
TCCTGATGCCAAGAAGCCTGATGATTGGG
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