CF417160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2) HSP 1 Score: 47.7506 bits (112), Expect = 7.586e-15 Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 2 Query: 428 ILSSSVQMLLTASSLTMRRNNLVACTP-DWDLLPPKTIKDPDAKKPEDWDDKEYIPDP 598 +L S ++ + ++ NL++ + L+P KTI DP+ KKPEDWD++ IPDP Sbjct: 188 VLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDP 245 HSP 2 Score: 40.817 bits (94), Expect = 7.586e-15 Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3 Query: 276 FGGDTPYSIMFGPDICGYSTKKVHAILTY 362 F D+PYSIMFGPD CG +T KVH IL + Sbjct: 130 FDNDSPYSIMFGPDKCG-ATNKVHFILKH 157 HSP 3 Score: 31.9574 bits (71), Expect = 7.586e-15 Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1 Query: 625 DDIPKEITDPDAKKPDDW 678 DD P E+ DP+A KP+DW Sbjct: 274 DDEPVEVEDPEASKPEDW 291
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14 Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAP-------RKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474 ++WV+S +++ G + ++GK+ G DKG+QT+++ RFYAISA F FSNK KT V + + CGGGY+K+ + S ++ ++ Q ++ P +K L Q + +KK + C+ D TH+YT ILRPD +Y + +D Sbjct: 35 NRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTL-VIQYTVKHEQKMDCGGGYIKV--FPSDLDQK------KMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVD 187
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13 Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAP-------RKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474 ++W++S +++ G + ++GK+ G DKG+QT+++ RFYAISA F FSNK KT V + + CGGGY+K+ ++NL + Q ++ P +K L + + +KK + C+ D TH+YT ILRPD +Y + ID Sbjct: 35 NRWLQST---NDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARFKPFSNKGKTL-VIQYTVKHEQKMDCGGGYIKVF-PADIDQKNL-------NGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKID 187
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1) HSP 1 Score: 50.447 bits (119), Expect = 2.164e-12 Identity = 56/176 (31.82%), Postives = 76/176 (43.18%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKC-----MPFL-----PTMGQTN*SKKEVP--CETDQLTHVYTFILRPDATYSILIDNAEKQ 489 + +W+ SD K+D N G W + + +D G+ SE R YAI E E S KD T V F CGG Y+K L + P S++ P KC + F+ P G+ + P +D+LTHVYT IL+PD ILID EK+ Sbjct: 49 DGRWIVSD-KEDYN--GVWKHAKSDGH---DDYGLLVSEQARKYAIVKELAESVSLKDGTV-VLQFETRLQNGLECGGAYIKYL-----RPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKK 212 HSP 2 Score: 33.113 bits (74), Expect = 2.164e-12 Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1 Query: 625 DDIPKEITDPDAKKPDDW 678 DD P+EI DP+A KP+DW Sbjct: 281 DDEPEEIDDPEATKPEDW 298 HSP 3 Score: 28.4906 bits (62), Expect = 2.164e-12 Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2 Query: 509 DWDLLPPKTIKDPDAKKPEDWDD 577 DWD I DP A KP+DWD+ Sbjct: 242 DWD--ERAKIPDPSAVKPDDWDE 262
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 2.640e-11 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 2 Query: 518 LLPPKTIKDPDAKKPEDWDDKEYIPDPE 601 L+P KTI DPD KKPEDWD++ IPDPE Sbjct: 227 LIPSKTIPDPDDKKPEDWDERAKIPDPE 254 HSP 2 Score: 39.2762 bits (90), Expect = 2.640e-11 Identity = 50/176 (28.41%), Postives = 77/176 (43.75%), Query Frame = 1 Query: 1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKC-----MPFL-----PTMGQTN*SKKEVP--CETDQLTHVYTFILRPDATYSILIDNAEKQ 489 +++W+ S K++ N G W ++ + + +D G+ SE R YAI E S KD T V F CGG Y+K L + P S++ P +C + F+ P G+ + P +D+L+HVYT +L+ D SILID EK+ Sbjct: 50 DNRWIVSG-KEEYN--GVWKHSKSEGH---DDFGLLVSEPARKYAIVKELDAPVSLKDGTV-VLQFETRLQNGLECGGAYIKYL-----QTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKK 213 The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bpback to top |