CF417160

Overview
NameCF417160
Unique NameCF417160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1647 contig Csv1_Contig1647:171..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX2_ARATH (Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g07340 PE=2 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 7.586e-15
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 2
Query:  428 ILSSSVQMLLTASSLTMRRNNLVACTP-DWDLLPPKTIKDPDAKKPEDWDDKEYIPDP 598
            +L S  ++ +       ++ NL++    +  L+P KTI DP+ KKPEDWD++  IPDP
Sbjct:  188 VLKSDNEVRILVDGEEKKKGNLLSAEDFEPPLIPSKTIPDPEDKKPEDWDERAKIPDP 245          

HSP 2 Score: 40.817 bits (94), Expect = 7.586e-15
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 3
Query:  276 FGGDTPYSIMFGPDICGYSTKKVHAILTY 362
            F  D+PYSIMFGPD CG +T KVH IL +
Sbjct:  130 FDNDSPYSIMFGPDKCG-ATNKVHFILKH 157          

HSP 3 Score: 31.9574 bits (71), Expect = 7.586e-15
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  625 DDIPKEITDPDAKKPDDW 678
            DD P E+ DP+A KP+DW
Sbjct:  274 DDEPVEVEDPEASKPEDW 291          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_MOUSE (Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 54/165 (32.73%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAP-------RKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474
            ++WV+S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KT  V  +     +   CGGGY+K+  + S  ++        ++   Q  ++  P       +K    L    Q + +KK + C+ D  TH+YT ILRPD +Y + +D
Sbjct:   35 NRWVQST---NDSQFGHFRVSSGKFYGHKEKDKGLQTTQNSRFYAISASFKPFSNKGKTL-VIQYTVKHEQKMDCGGGYIKV--FPSDLDQK------KMNGKSQYYIMFGPDICGFDIKKVHVILYFKNQYHENKKPIRCKVDGFTHLYTLILRPDLSYEVKVD 187          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALR3_HUMAN (Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    4 SQWVKSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAP-------RKCMPFLPTMGQTN*SKKEVPCETDQLTHVYTFILRPDATYSILID 474
            ++W++S    +++  G +  ++GK+ G    DKG+QT+++ RFYAISA F  FSNK KT  V  +     +   CGGGY+K+       ++NL       +   Q  ++  P       +K    L    + + +KK + C+ D  TH+YT ILRPD +Y + ID
Sbjct:   35 NRWLQST---NDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGRFYAISARFKPFSNKGKTL-VIQYTVKHEQKMDCGGGYIKVF-PADIDQKNL-------NGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKID 187          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_SOYBN (Calnexin homolog OS=Glycine max PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.164e-12
Identity = 56/176 (31.82%), Postives = 76/176 (43.18%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKC-----MPFL-----PTMGQTN*SKKEVP--CETDQLTHVYTFILRPDATYSILIDNAEKQ 489
            + +W+ SD K+D N  G W +     +   +D G+  SE  R YAI  E  E  S KD T  V  F         CGG Y+K L       +     P         S++  P KC     + F+     P  G+      + P    +D+LTHVYT IL+PD    ILID  EK+
Sbjct:   49 DGRWIVSD-KEDYN--GVWKHAKSDGH---DDYGLLVSEQARKYAIVKELAESVSLKDGTV-VLQFETRLQNGLECGGAYIKYL-----RPQESGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLTHVYTAILKPDNELQILIDGEEKK 212          

HSP 2 Score: 33.113 bits (74), Expect = 2.164e-12
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  625 DDIPKEITDPDAKKPDDW 678
            DD P+EI DP+A KP+DW
Sbjct:  281 DDEPEEIDDPEATKPEDW 298          

HSP 3 Score: 28.4906 bits (62), Expect = 2.164e-12
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  509 DWDLLPPKTIKDPDAKKPEDWDD 577
            DWD      I DP A KP+DWD+
Sbjct:  242 DWD--ERAKIPDPSAVKPDDWDE 262          
BLAST of CF417160 vs. ExPASy Swiss-Prot
Match: CALX_PEA (Calnexin homolog OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.640e-11
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 2
Query:  518 LLPPKTIKDPDAKKPEDWDDKEYIPDPE 601
            L+P KTI DPD KKPEDWD++  IPDPE
Sbjct:  227 LIPSKTIPDPDDKKPEDWDERAKIPDPE 254          

HSP 2 Score: 39.2762 bits (90), Expect = 2.640e-11
Identity = 50/176 (28.41%), Postives = 77/176 (43.75%), Query Frame = 1
Query:    1 ESQWVKSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPE-FSNKDKTXRVPVFC*A*TEAWTCGGGYMKLL*WRS*SEENLVVIPLTVSCLDQISVVIAPRKC-----MPFL-----PTMGQTN*SKKEVP--CETDQLTHVYTFILRPDATYSILIDNAEKQ 489
            +++W+ S  K++ N  G W ++  + +   +D G+  SE  R YAI  E     S KD T  V  F         CGG Y+K L       +     P         S++  P +C     + F+     P  G+      + P    +D+L+HVYT +L+ D   SILID  EK+
Sbjct:   50 DNRWIVSG-KEEYN--GVWKHSKSEGH---DDFGLLVSEPARKYAIVKELDAPVSLKDGTV-VLQFETRLQNGLECGGAYIKYL-----QTQESGWKPKGFDNESGYSIMFGPDRCGATNKVHFIFRHKNPKTGKHVEHHLKFPPSVPSDKLSHVYTAVLKDDNEVSILIDGEEKK 213          
The following BLAST results are available for this feature:
BLAST of CF417160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CALX2_ARATH7.586e-1537.93Calnexin homolog 2 OS=Arabidopsis thaliana GN=At5g... [more]
CALR3_MOUSE4.506e-1432.73Calreticulin-3 OS=Mus musculus GN=Calr3 PE=1 SV=1[more]
CALR3_HUMAN1.712e-1332.73Calreticulin-3 OS=Homo sapiens GN=CALR3 PE=1 SV=2[more]
CALX_SOYBN2.164e-1231.82Calnexin homolog OS=Glycine max PE=2 SV=1[more]
CALX_PEA2.640e-1171.43Calnexin homolog OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-090 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417160 ID=CF417160; Name=CF417160; organism=Citrus sinensis; type=EST; length=679bp
GAAAGCCAGTGGGTTAAATCTGATTGGAAGAAAGATGAGAACACGGCTGG
AGAATGGAACTACACTGCCGGGAAATGGAATGGGGACCCGAATGATAAAG
GTATTCAAACTAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAATTC
CCTGAATTCAGCAACAAGGACAAGACACNTCGTGTTCCAGTTTTCTGTTA
AGCATGAACAGAAGCTTGGACCTGTGGTGGTGGCTACATGAAGTTGCTTT
AGTGGCGAAGTTGATCAGAAGAAAATTTGGTGGTGATACCCCTTACAGTA
TCATGTTTGGACCAGATATCTGTGGTTATAGCACCAAGAAAGTGCATGCC
ATTCTTACCTACAATGGGACAAACAAATTGATCCAAGAAGGAAGTACCAT
GTGAGACTGACCAACTCACTCATGTTTATACTTTCATCCTCCGTCCAGAT
GCTACTTACAGCATCCTCATTGACAATGCGGAGAAACAATCTGGTAGCTT
GTACTCCTGATTGGGATCTCCTCCCTCCAAAGACCATCAAGGATCCTGAC
GCCAAGAAACCTGAAGACTGGGATGACAAAGAATATATTCCCGATCCTGA
AGACAAGNAAGCCAGAGGGGCTATGATGACATTCCAAAGGAGATAACAGA
TCCTGATGCCAAGAAGCCTGATGATTGGG
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