CF417164 | Citrus Genome Database

Overview


Name	CF417164
Unique Name	CF417164
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	678

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 6.813e-19
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1

Query:  184 RSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYCS 456
            +S S+ P  FT E +E +T ++  K  IG+GGFGSVY G L DG+ VAVK       S   +  T+ F NE+ +LS+I H NLV L GYC+
Sbjct:  579 KSVSVKP--FTLEYIEQATEQY--KTLIGEGGFGSVYRGTLDDGQEVAVKV-----RSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCN 660

HSP 2 Score: 39.2762 bits (90), Expect = 6.813e-19
Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W  RL IAL  A  + YLH      ++HRD+ SSNI ++
Sbjct:  691 LDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLD 731

HSP 3 Score: 26.1794 bits (56), Expect = 6.813e-19
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2

Query:  473 LLVYDYIPNGTLADHLHGSKS 535
            +LVY ++ NG+L D L+G  S
Sbjct:  666 ILVYPFMSNGSLLDRLYGEAS 686

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: NORK_PEA (Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.814e-19
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 1

Query:  184 RSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYCS 456
            +S S+ P  FT E +E +T K+  K  IG+GGFGSVY G L DG+ VAVK       S   +  T+ F NE+ +LS+I H NLV L GYC+
Sbjct:  578 KSVSVKP--FTLEYIELATEKY--KTLIGEGGFGSVYRGTLDDGQEVAVKV-----RSATSTQGTREFDNELNLLSAIQHENLVPLLGYCN 659

HSP 2 Score: 39.2762 bits (90), Expect = 6.814e-19
Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W  RL IAL  A  + YLH      ++HRD+ SSNI ++
Sbjct:  690 LDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLD 730

HSP 3 Score: 25.0238 bits (53), Expect = 6.814e-19
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 2

Query:  473 LLVYDYIPNGTLADHLHG 526
            +LVY ++ NG+L D L+G
Sbjct:  665 ILVYPFMSNGSLLDRLYG 682

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 6.823e-19
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 1

Query:   40 IAILSTVFSLTCLLLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASLLPPV------FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            + I+++V S   L++   + + +F  K+  S+ E  L  P+   ++   + S  P +      FTY E+   TN F   R +G+GGFG V  G +     VAVK L     S + +   K F  E+ +L  + H NLV L GYC
Sbjct:  509 VTIVASVGSAAILIVV--LVLVLFLRKKKPSAVEVVLPRPSRPTMNVPYANSPEPSIEMKKRKFTYSEVTKMTNNFG--RVVGEGGFGVVCHGTVNGSEQVAVKLL-----SQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYC 643

HSP 2 Score: 48.521 bits (114), Expect = 6.823e-19
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            + W  RL IA + AL +EYLH    PP+VHRD+ ++NI ++
Sbjct:  674 VNWGTRLRIAAEAALGLEYLHIGCTPPMVHRDVKTTNILLD 714

HSP 3 Score: 31.5722 bits (70), Expect = 6.823e-19
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            L+S  G   +   L L+Y+++PNG L  HL G
Sbjct:  636 LVSLVGYCDEGDHLALIYEFVPNGDLRQHLSG 667

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.824e-19
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 1

Query:   58 VFSLTCLLLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASLLPPV------FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            V S+  + +  ++ + IF   + +SS+   L+ P ++ +    S    P +      FTY E+   TN F  +R +G+GGFG V  G +     VAVK L     S + S   K F  E+ +L  + H NLV L GYC
Sbjct:  514 VASVASVAIIVAVLVIIFVLSKKKSSTVGALQPPLSMPMVHDNSPE--PSIETKKRRFTYSEVIKMTNNF--QRVVGEGGFGVVCHGTINGSEQVAVKVL-----SQSSSQGYKHFKAEVDLLLRVHHTNLVSLVGYC 642

HSP 2 Score: 50.447 bits (119), Expect = 6.824e-19
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            + W  RL IAL+ AL +EYLH    PPIVHRDI ++NI ++
Sbjct:  673 INWGNRLRIALEAALGLEYLHSGCTPPIVHRDIKTTNILLD 713

HSP 3 Score: 28.8758 bits (63), Expect = 6.824e-19
Identity = 12/32 (37.50%), Postives = 18/32 (56.25%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            L+S  G   +   L L+Y+++P G L  HL G
Sbjct:  635 LVSLVGYCDERDHLALIYEFLPKGDLRQHLSG 666

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLN_ARATH (Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.850e-19
Identity = 39/82 (47.56%), Postives = 49/82 (59.76%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            VF   ELE +T  F   R +G GG G+VY G L DGR VAVK   SK    +K    + F NE++ILS I+H ++VKL G C
Sbjct:  440 VFNSRELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVK--KSKVIDEDK---LQEFINEVVILSQINHRHVVKLLGCC 516

HSP 2 Score: 43.5134 bits (101), Expect = 6.850e-19
Identity = 20/42 (47.62%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            ++ W +RL IA+  A A+ YLH S   PI HRDI S+NI ++
Sbjct:  547 TMLWGMRLRIAVDIAGALSYLHSSASSPIYHRDIKSTNILLD 588

HSP 3 Score: 26.5646 bits (57), Expect = 6.850e-19
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 2

Query:  473 LLVYDYIPNGTLADHLHGSKS 535
            +LVY++I NG L  H+H  +S
Sbjct:  523 MLVYEFIINGNLFKHIHEEES 543

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.815e-19
Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 1

Query:   40 IAILSTVFSLTCLLLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            + I+    +   +L + ++   I RSKR R + E ++E    L        S+    FT  EL+S+T+ F    +IG GG+G VY G L  G +VAVK          K F T     EI +LS + H NLV L GYC
Sbjct:  564 VGIIIGAIAFFLVLSSLALVFFIKRSKRKRKTREVDMEQEHPLPKPPMNMESVKGYNFT--ELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFT-----EIELLSRLHHRNLVSLLGYC 694

HSP 2 Score: 40.817 bits (94), Expect = 8.815e-19
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+  +RL IAL +A  + YLH    PPI+HRDI  SNI ++
Sbjct:  724 LSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLD 764

HSP 3 Score: 28.1054 bits (61), Expect = 8.815e-19
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHL 520
            L+S  G        +LVY+Y+PNG+L D L
Sbjct:  687 LVSLLGYCDQKGEQMLVYEYMPNGSLQDAL 716

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.877e-19
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            +FT +ELE +T  F   R +G GG G+VY G L DGR VAVK   SK    +K    + F NE++ILS I+H ++VKL G C
Sbjct:  431 IFTSKELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVK--KSKVIDEDK---LQEFINEVVILSQINHRHVVKLLGCC 507

HSP 2 Score: 42.3578 bits (98), Expect = 8.877e-19
Identity = 19/42 (45.24%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            ++ W +RL IA+  A A+ YLH +   PI HRDI S+NI ++
Sbjct:  538 TMIWGMRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLD 579

HSP 3 Score: 25.409 bits (54), Expect = 8.877e-19
Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2

Query:  473 LLVYDYIPNGTLADHLH 523
            +LVY++I NG L  H+H
Sbjct:  514 ILVYEFIINGNLFKHIH 530

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: ACCR1_ARATH (Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 1.150e-18
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1

Query:  208 VFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGY 450
            VF   EL+ +TN F    ++G G +G VY   L DGR VAVK  ++   +     +T+ F  E+ IL +I H N+V L GY
Sbjct:  507 VFRLSELKDATNGFKEFNELGRGSYGFVYKAVLADGRQVAVKRANA---ATIIHTNTREFETELEILCNIRHCNIVNLLGY 584

HSP 2 Score: 47.7506 bits (112), Expect = 1.150e-18
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+W +R+ IA+QTA  +EYLH    P I+H D+ SSN+ ++
Sbjct:  614 LSWSLRIKIAMQTAKGLEYLHNEAEPRIIHGDVKSSNVLLD 654

HSP 3 Score: 35.039 bits (79), Expect = 1.150e-18
Identity = 15/35 (42.86%), Postives = 23/35 (65.71%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSKS 535
            +++  G + +    LLVY+Y+P+GTL DHLH   S
Sbjct:  578 IVNLLGYSTEMGERLLVYEYMPHGTLHDHLHSGFS 612

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.925e-18
Identity = 30/81 (37.04%), Postives = 43/81 (53.09%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            F + EL+++T  FD     G GGFG VY+G++  G  VA+     K  S +       F  EI +LS + H +LV L G+C
Sbjct:  513 FPFTELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQVAI-----KRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFC 588

HSP 2 Score: 40.4318 bits (93), Expect = 1.925e-18
Identity = 15/42 (35.71%), Postives = 28/42 (66.67%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            +L+W+ RL+I + +A  + YLH      I+HRD+ ++NI ++
Sbjct:  623 TLSWKQRLEICIGSARGLHYLHTGAAQGIIHRDVKTTNILLD 664

HSP 3 Score: 38.1206 bits (87), Expect = 1.925e-18
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSK 532
            L+S  G   + + ++LVY+Y+ NG L DHL+GSK
Sbjct:  581 LVSLIGFCDENKEMILVYEYMSNGPLRDHLYGSK 614

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLP_ARATH (Wall-associated receptor kinase-like 15 OS=Arabidopsis thaliana GN=WAKL15 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.944e-18
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 1

Query:  172 LHRHR---SASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            LHR+    +++ L  +FT +E+  +T+ F     +G GGFG V+ G L DG  VAV     K        S     NE+ IL  + H NLVKL G C
Sbjct:  326 LHRNLLSINSTGLDRIFTGKEIVKATDNFAKSNLLGFGGFGEVFKGNLDDGTTVAV-----KRAKLGNEKSIYQIVNEVQILCQVSHKNLVKLLGCC 417

HSP 2 Score: 44.2838 bits (103), Expect = 1.944e-18
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 3

Query:  570 RLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            RL IA QTA  ++YLH S  PPI HRD+ SSNI ++
Sbjct:  458 RLMIAHQTAQGLDYLHSSSSPPIYHRDVKSSNILLD 493

HSP 3 Score: 31.9574 bits (71), Expect = 1.944e-18
Identity = 12/32 (37.50%), Postives = 21/32 (65.62%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            L+   G   +    +LVY+++PNGTL +H++G
Sbjct:  410 LVKLLGCCIELEMPVLVYEFVPNGTLFEHIYG 441

The following BLAST results are available for this feature:

BLAST of CF417164 vs. ExPASy Swiss-Prot

BLAST of CF417164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
NORK_MEDTR	6.813e-19	46.15	Nodulation receptor kinase OS=Medicago truncatula ...	[more]
NORK_PEA	6.814e-19	47.25	Nodulation receptor kinase OS=Pisum sativum GN=NOR...	[more]
Y5596_ARATH	6.823e-19	31.25	Probable LRR receptor-like serine/threonine-protei...	[more]
PAM74_ARATH	6.824e-19	31.88	Probable LRR receptor-like serine/threonine-protei...	[more]
WAKLN_ARATH	6.850e-19	47.56	Wall-associated receptor kinase-like 18 OS=Arabido...	[more]
Y5374_ARATH	8.815e-19	34.78	Probable LRR receptor-like serine/threonine-protei...	[more]
WAKLM_ARATH	8.877e-19	47.56	Wall-associated receptor kinase-like 17 OS=Arabido...	[more]
ACCR1_ARATH	1.150e-18	39.51	Serine/threonine-protein kinase-like protein CCR1 ...	[more]
Y5613_ARATH	1.925e-18	37.04	Probable receptor-like protein kinase At5g61350 OS...	[more]
WAKLP_ARATH	1.944e-18	37.11	Wall-associated receptor kinase-like 15 OS=Arabido...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-094 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B6 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417164 ID=CF417164; Name=CF417164; organism=Citrus sinensis; type=EST; length=678bp
TTGTCACCTCCCTGGATCCACCCAACCAAACTCAATCGCATTGCAATCTT
AAGCACCGTCTTTTCGTTAACATGTTTGCTGCTTGCGTTTTCAATTGGCA
TAGCTATTTTCAGGTCCAAAAGGTTCAGGTCGTCGTCAGAGACAGAATTA
GAAGATCCAACAACTCTGTTTCTTCATCGCCACCGCTCAGCGAGTCTTCT
CCCTCCAGTATTCACCTACGAAGAGCTCGAATCTTCCACTAATAAGTTCG
ACCCGAAGCGCAAAATCGGCGACGGAGGCTTTGGATCCGTTTACTTGGGC
CAACTATTTGACGGCCGAATCGTCGCCGTTAAATACCTTCATAGTAAACA
CCACAGTTGCAACAAATCCTTCTCCACTAAATCCTTCTGCAACGAAATCT
TGATTCTGTCCTCTATTGATCACCCAAATCTTGTTAAGCTTCACGGGTAC
TGCAGCGGATCCTAGAGGTTTGCTTTTGGTCTATGATTACATTCCCAACG
GCACACTTGCTGACCATCTCCACGGCTCAAAGAGCTTGTACCGCGACGGG
GTCGTTGACGTGGCAGGTCAGGCTTGATATCGCTTTGCAAACAGCTTTAG
CCATGGAGTACTTGCATTTCTCTGTCGTGCCTCCGATTGTTCACAGAGAT
ATTACTTCGTCTAACATTTTTGTGGAGA