CF417164 | Citrus Genome Database

Overview


Name	CF417164
Unique Name	CF417164
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	678

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 2.487e-18
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            FTY E+ + TN F+  R +G GGFG VY G + +   VAVK L    HS ++ +  K F  E+ +L  + H NLV L GYC
Sbjct:  582 FTYSEVVTMTNNFE--RVLGKGGFGMVYHGTVNNTEQVAVKMLS---HSSSQGY--KEFKAEVELLLRVHHKNLVGLVGYC 655

HSP 2 Score: 46.2098 bits (108), Expect = 2.487e-18
Identity = 18/40 (45.00%), Postives = 28/40 (70.00%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFV 674
            L W+ RL I +++A  +EYLH    PP+VHRD+ ++NI +
Sbjct:  686 LNWETRLKIVVESAQGLEYLHNGCKPPMVHRDVKTTNILL 725

HSP 3 Score: 30.0314 bits (66), Expect = 2.487e-18
Identity = 11/34 (32.35%), Postives = 19/34 (55.88%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGSK 532
            L+   G   +   L L+Y+Y+ NG L +H+ G +
Sbjct:  648 LVGLVGYCDEGENLALIYEYMANGDLREHMSGKR 681

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.490e-18
Identity = 36/91 (39.56%), Postives = 48/91 (52.75%), Query Frame = 1

Query:  181 HRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            + SA  L   F+  EL+  T  FD    IG GGFG+VY+G + DG  VA+K  + +       F T     EI +LS + H +LV L GYC
Sbjct:  503 YNSALGLGRYFSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGITEFHT-----EIQMLSKLRHRHLVSLIGYC 588

HSP 2 Score: 42.3578 bits (98), Expect = 2.490e-18
Identity = 17/41 (41.46%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            LTW+ RL+I +  A  + YLH      I+HRD+ S+NI ++
Sbjct:  618 LTWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKSTNILLD 658

HSP 3 Score: 31.9574 bits (71), Expect = 2.490e-18
Identity = 13/32 (40.62%), Postives = 20/32 (62.50%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            L+S  G   +   ++LVY+Y+ NG   DHL+G
Sbjct:  581 LVSLIGYCDENAEMILVYEYMSNGPFRDHLYG 612

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.492e-18
Identity = 50/160 (31.25%), Postives = 74/160 (46.25%), Query Frame = 1

Query:   37 RIAILSTVFSLTCLLLAFSIGIAIF-RSKRFRSSSETELEDPT---TLFLHRHRS-----------------ASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            RI  +S    +  ++    +GI +    K+ RS S+    +P     LFLH + S                 AS +   FT  E+ ++T  FD    IG GGFG VY G+L DG ++A+K   +  HS         F  EI++LS + H +LV L G+C
Sbjct:  429 RIIWISVGAGIAIIIFFVFLGILVVCLCKKRRSKSDESKNNPPGWRPLFLHVNNSTANAKATGGSLRLNTLAASTMGRKFTLAEIRAATKNFDDGLAIGVGGFGKVYRGELEDGTLIAIK--RATPHS---QQGLAEFETEIVMLSRLRHRHLVSLIGFC 583

HSP 2 Score: 36.1946 bits (82), Expect = 2.492e-18
Identity = 14/41 (34.15%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+W+ RL+  + +A  + YLH      I+HRD+ ++NI ++
Sbjct:  613 LSWKQRLEACIGSARGLHYLHTGSERGIIHRDVKTTNILLD 653

HSP 3 Score: 34.2686 bits (77), Expect = 2.492e-18
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGS 529
            L+S  G   +   ++LVY+Y+ NGTL  HL GS
Sbjct:  576 LVSLIGFCDEHNEMILVYEYMANGTLRSHLFGS 608

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.227e-18
Identity = 54/167 (32.34%), Postives = 75/167 (44.91%), Query Frame = 1

Query:   25 TKLNRIAILSTVFSLTCLLL-AFSIGIAIFRSKRFRSSSETE--------------LEDPTTLFLHRHRSASL---------LPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            +K   + I S V ++T +LL A      +  S++ RS+S  E              L    T     H+SA+          L   F ++E+  +TNKFD    +G GGFG VY G L DG  VAVK  + +       F T     EI +LS + H +LV L GYC
Sbjct:  412 SKKKAVIIGSLVGAVTLILLIAVCCYCCLVASRKQRSTSPQEGGNGHPWLPLPLYGLSQTLTKSTASHKSATASCISLASTHLGRCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRT-----EIEMLSKLRHRHLVSLIGYC 573

HSP 2 Score: 39.2762 bits (90), Expect = 3.227e-18
Identity = 15/41 (36.59%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+W+ RL+I +  A  + YLH      I+HRD+ ++NI ++
Sbjct:  603 LSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLD 643

HSP 3 Score: 31.5722 bits (70), Expect = 3.227e-18
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGS 529
            L+S  G   +   ++LVY+Y+ NG L  HL+G+
Sbjct:  566 LVSLIGYCDERSEMILVYEYMANGPLRSHLYGA 598

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.962e-18
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1

Query:   79 LLAFSIGIAIFRSKRFRSSSETELEDPTTLFLHRHRSASL------LPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            L+  ++G+ IF  KR R  S  +        L + +  +       +  +F+ EEL+ +T+ F  KR +G G  G+VY G + DG+I+AVK   SK    +K    + F NEI++LS I+H N+VKL G C
Sbjct:  370 LVVGTLGLIIFIKKRRRIISSRKFFKRNGGLLLKQQLTTTNDGNVDMSRLFSSEELKKATDNFSVKRVLGKGSQGTVYKGMMVDGKIIAVK--RSKVVDEDK---LEKFINEIILLSQINHRNIVKLIGCC 495

HSP 2 Score: 45.0542 bits (105), Expect = 3.962e-18
Identity = 19/42 (45.24%), Postives = 31/42 (73.81%), Query Frame = 3

Query:  552 SLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            ++TW+VRL IA++ A A+ Y+H +   PI HRDI ++NI ++
Sbjct:  525 AMTWEVRLRIAIEIAGALTYMHSAASFPIYHRDIKTTNILLD 566

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.161e-18
Identity = 38/140 (27.14%), Postives = 66/140 (47.14%), Query Frame = 1

Query:   40 IAILSTVFSLTCLLLAFSIGIAIFRS---KRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGY 450
            I I+  V +L C++      +A+++S   K+    S  + E  T L +     A     + T++++   T   + K  IG G   +VY   L   R +A+K L++++    + F T     E+  + SI H N+V LHGY
Sbjct:  586 ICIVLGVITLLCMIF-----LAVYKSMQQKKILQGSSKQAEGLTKLVILHMDMA-----IHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRLYNQYPHNLREFET-----ELETIGSIRHRNIVSLHGY 710

HSP 2 Score: 45.4394 bits (106), Expect = 4.161e-18
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W+ RL IA+  A  + YLH    P I+HRDI SSNI ++
Sbjct:  742 LDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLD 782

HSP 3 Score: 38.1206 bits (87), Expect = 4.161e-18
Identity = 18/33 (54.55%), Postives = 22/33 (66.67%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGS 529
            ++S  G A  P G LL YDY+ NG+L D LHGS
Sbjct:  704 IVSLHGYALSPTGNLLFYDYMENGSLWDLLHGS 736

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 4.175e-18
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            F+  EL+ +T  F+  + IG GGFG+VY+G L DG  VAVK  + +       F T     EI +LS + H +LV L GYC
Sbjct:  514 FSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQT-----EIQMLSKLRHRHLVSLIGYC 589

HSP 2 Score: 42.743 bits (99), Expect = 4.175e-18
Identity = 17/41 (41.46%), Postives = 27/41 (65.85%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            LTW+ RL+I + +A  + YLH      I+HRD+ S+NI ++
Sbjct:  619 LTWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKSTNILLD 659

HSP 3 Score: 30.4166 bits (67), Expect = 4.175e-18
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            L+S  G   +   ++LVY+++ NG   DHL+G
Sbjct:  582 LVSLIGYCDENSEMILVYEFMSNGPFRDHLYG 613

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.185e-18
Identity = 43/112 (38.39%), Postives = 52/112 (46.43%), Query Frame = 1

Query:  118 KRFRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYC 453
            +RFR SS +   + T      H          ++ EL+S TN FD    IG GGFG V+ G L D   VAV     K  S         F +EI ILS I H +LV L GYC
Sbjct:  452 RRFRGSSNSRTTERTVSSSGYHTLR------ISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAV-----KRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYC 552

HSP 2 Score: 39.2762 bits (90), Expect = 4.185e-18
Identity = 16/41 (39.02%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L+W+ RL++ +  A  + YLH      I+HRDI S+NI ++
Sbjct:  582 LSWKQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLD 622

HSP 3 Score: 31.5722 bits (70), Expect = 4.185e-18
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHGS 529
            L+S  G   +   ++LVY+Y+  G L  HL+GS
Sbjct:  545 LVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGS 577

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 5.476e-18
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1

Query:  211 FTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGYCS 456
            F  EELE +TN F  K  IG GGFG VY G L DG ++AVK +       +  F      NE+ I+S++ H NLV L G CS
Sbjct:  283 FKIEELEKATNNFSQKNFIGRGGFGFVYKGVLPDGSVIAVKKVIESEFQGDAEFR-----NEVEIISNLKHRNLVPLRG-CS 358

HSP 2 Score: 41.5874 bits (96), Expect = 5.476e-18
Identity = 20/49 (40.82%), Postives = 26/49 (53.06%), Query Frame = 3

Query:  531 RACTATGSLTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            R  T    L+W  R  I L  A  + YLH+ V P I HRDI  +NI ++
Sbjct:  387 RGETTKMPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKGTNILLD 435

HSP 3 Score: 27.7202 bits (60), Expect = 5.476e-18
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 2

Query:  476 LVYDYIPNGTLADHL 520
            LVYDY+ NG L DHL
Sbjct:  370 LVYDYMSNGNLDDHL 384

[Close]

BLAST of CF417164 vs. ExPASy Swiss-Prot
Match: ERL2_ARATH (LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 6.978e-18
Identity = 38/142 (26.76%), Postives = 67/142 (47.18%), Query Frame = 1

Query:   37 RIAILSTVFSLTCLLLAFSIGIAIFRSKR----FRSSSETELEDPTTLFLHRHRSASLLPPVFTYEELESSTNKFDPKRKIGDGGFGSVYLGQLFDGRIVAVKYLHSKHHSCNKSFSTKSFCNEILILSSIDHPNLVKLHGY 450
            R+A++  V     L+    I IA+++SK+     + SS+        + LH   +      + T++++   T   D K  IG G   +VY       R +A+K +++++ S  + F T     E+  + SI H N+V LHGY
Sbjct:  585 RVAVICMVLGFITLICM--IFIAVYKSKQQKPVLKGSSKQPEGSTKLVILHMDMA------IHTFDDIMRVTENLDEKYIIGYGASSTVYKCTSKTSRPIAIKRIYNQYPSNFREFET-----ELETIGSIRHRNIVSLHGY 713

HSP 2 Score: 45.4394 bits (106), Expect = 6.978e-18
Identity = 20/41 (48.78%), Postives = 26/41 (63.41%), Query Frame = 3

Query:  555 LTWQVRLDIALQTALAMEYLHFSVVPPIVHRDITSSNIFVE 677
            L W+ RL IA+  A  + YLH    P I+HRDI SSNI ++
Sbjct:  745 LDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLD 785

HSP 3 Score: 35.8094 bits (81), Expect = 6.978e-18
Identity = 17/32 (53.12%), Postives = 21/32 (65.62%), Query Frame = 2

Query:  431 LLSFTGTAADPRGLLLVYDYIPNGTLADHLHG 526
            ++S  G A  P G LL YDY+ NG+L D LHG
Sbjct:  707 IVSLHGYALSPFGNLLFYDYMENGSLWDLLHG 738

The following BLAST results are available for this feature:

BLAST of CF417164 vs. ExPASy Swiss-Prot

BLAST of CF417164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208


Match Name	E-value	Identity	Description
RLK6_ARATH	2.487e-18	43.21	Receptor-like protein kinase At3g21340 OS=Arabidop...	[more]
Y2214_ARATH	2.490e-18	39.56	Probable receptor-like protein kinase At2g21480 OS...	[more]
Y1357_ARATH	2.492e-18	31.25	Probable receptor-like protein kinase At1g30570 OS...	[more]
THE1_ARATH	3.227e-18	32.34	Receptor-like protein kinase THESEUS 1 OS=Arabidop...	[more]
WAKLE_ARATH	3.962e-18	35.11	Wall-associated receptor kinase-like 5 OS=Arabidop...	[more]
ERL1_ARATH	4.161e-18	27.14	LRR receptor-like serine/threonine-protein kinase ...	[more]
Y4391_ARATH	4.175e-18	41.98	Probable receptor-like protein kinase At4g39110 OS...	[more]
Y5241_ARATH	4.185e-18	38.39	Probable receptor-like protein kinase At5g24010 OS...	[more]
Y1105_ARATH	5.476e-18	45.12	Probable receptor-like protein kinase At1g11050 OS...	[more]
ERL2_ARATH	6.978e-18	26.76	LRR receptor-like serine/threonine-protein kinase ...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-094 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B6 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417164 ID=CF417164; Name=CF417164; organism=Citrus sinensis; type=EST; length=678bp
TTGTCACCTCCCTGGATCCACCCAACCAAACTCAATCGCATTGCAATCTT
AAGCACCGTCTTTTCGTTAACATGTTTGCTGCTTGCGTTTTCAATTGGCA
TAGCTATTTTCAGGTCCAAAAGGTTCAGGTCGTCGTCAGAGACAGAATTA
GAAGATCCAACAACTCTGTTTCTTCATCGCCACCGCTCAGCGAGTCTTCT
CCCTCCAGTATTCACCTACGAAGAGCTCGAATCTTCCACTAATAAGTTCG
ACCCGAAGCGCAAAATCGGCGACGGAGGCTTTGGATCCGTTTACTTGGGC
CAACTATTTGACGGCCGAATCGTCGCCGTTAAATACCTTCATAGTAAACA
CCACAGTTGCAACAAATCCTTCTCCACTAAATCCTTCTGCAACGAAATCT
TGATTCTGTCCTCTATTGATCACCCAAATCTTGTTAAGCTTCACGGGTAC
TGCAGCGGATCCTAGAGGTTTGCTTTTGGTCTATGATTACATTCCCAACG
GCACACTTGCTGACCATCTCCACGGCTCAAAGAGCTTGTACCGCGACGGG
GTCGTTGACGTGGCAGGTCAGGCTTGATATCGCTTTGCAAACAGCTTTAG
CCATGGAGTACTTGCATTTCTCTGTCGTGCCTCCGATTGTTCACAGAGAT
ATTACTTCGTCTAACATTTTTGTGGAGA