CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.112e-52
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G+ NEGFVEVLAAQQ+PENPNWFQGTADA
Sbjct:    2 KKVLSIILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFTGF-NEGFVEVLAAQQTPENPNWFQGTADA 103

HSP 2 Score: 58.5362 bits (140), Expect = 6.112e-52
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLWL EE +V E+L+L+GDHLYRMDY +FIQ
Sbjct:  104 VRQYLWLMEEWDVEEYLILSGDHLYRMDYRQFIQ 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.640e-51
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G+ +EGFVEVLAAQQ+PENPNWFQGTADA
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFSGF-SEGFVEVLAAQQTPENPNWFQGTADA 103

HSP 2 Score: 56.225 bits (134), Expect = 6.640e-51
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLW+ +E +V EFL+L+GDHLYRMDY  FIQ
Sbjct:  104 VRQYLWMLQEWDVDEFLILSGDHLYRMDYRLFIQ 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.640e-51
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVP+   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH++R Y  N  G+ +EGFVEVLAAQQ+PENPNWFQGTADA
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKLRAKPAVPVAGKYRLIDIPVSNCINSEIFKIYVLTQFNSASLNRHIARTY--NFSGF-SEGFVEVLAAQQTPENPNWFQGTADA 103

HSP 2 Score: 56.225 bits (134), Expect = 6.640e-51
Identity = 24/34 (70.59%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLW+ +E +V EFL+L+GDHLYRMDY  FIQ
Sbjct:  104 VRQYLWMLQEWDVDEFLILSGDHLYRMDYRLFIQ 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 4.244e-50
Identity = 83/105 (79.05%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I KIYVLTQFNSASLNRH+SRAY  N  G++ EGFVEVLAAQQ+ +NP+WFQGTADA
Sbjct:   12 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAY--NFSGFQ-EGFVEVLAAQQTKDNPDWFQGTADA 113

HSP 2 Score: 56.225 bits (134), Expect = 4.244e-50
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLWLF E +V E+L+L+GDHLYRMDY +F++
Sbjct:  114 VRQYLWLFREWDVDEYLILSGDHLYRMDYAQFVK 147
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.212e-50
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            ++VL IILGGGAG+RLYPLTK+RAKPAVPL   YRLIDIPVSNC+N++I+KIYVLTQFNSASLNRHLS+ Y  N+      GFVEVLAAQ +PENPNWFQGTADA
Sbjct:    2 KNVLAIILGGGAGSRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINADINKIYVLTQFNSASLNRHLSQTY--NLSSGFGNGFVEVLAAQITPENPNWFQGTADA 104

HSP 2 Score: 56.6102 bits (135), Expect = 7.212e-50
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLWL +E +V E+L+L+GDHLYRMDY +FIQ
Sbjct:  105 VRQYLWLIKEWDVDEYLILSGDHLYRMDYSQFIQ 138
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.212e-50
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            ++VL IILGGGAG+RLYPLTK+RAKPAVPL   YRLIDIPVSNC+N++I+KIYVLTQFNSASLNRHLS+ Y  N+      GFVEVLAAQ +PENPNWFQGTADA
Sbjct:    2 KNVLAIILGGGAGSRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINADINKIYVLTQFNSASLNRHLSQTY--NLSSGFGNGFVEVLAAQITPENPNWFQGTADA 104

HSP 2 Score: 56.6102 bits (135), Expect = 7.212e-50
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLWL +E +V E+L+L+GDHLYRMDY +FIQ
Sbjct:  105 VRQYLWLIKEWDVDEYLILSGDHLYRMDYSQFIQ 138
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 4.610e-49
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VLGIILGGGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I KIY+LTQFNSASLNRH+SR Y  N  G+  EGF EVLAAQQ+ ENP+WFQGTADA
Sbjct:    2 KRVLGIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIHKIYILTQFNSASLNRHISRTY--NFTGF-TEGFTEVLAAQQTKENPDWFQGTADA 103

HSP 2 Score: 53.5286 bits (127), Expect = 4.610e-49
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQY WL E+ +V E+++L+GDHLYRMDY  FIQ
Sbjct:  104 VRQYSWLLEDWDVDEYIILSGDHLYRMDYREFIQ 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP8 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glgC PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.831e-49
Identity = 81/105 (77.14%), Postives = 89/105 (84.76%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVPL   YRLIDIP+SNC+NS I KIYVLTQFNSASLNRHL+R Y  N  G+ ++GFVEVLAAQQ+ ENP WFQGTADA
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPLSNCINSEILKIYVLTQFNSASLNRHLTRTY--NFTGF-SDGFVEVLAAQQTAENPKWFQGTADA 103

HSP 2 Score: 55.8398 bits (133), Expect = 7.831e-49
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQYLW F+E ++ E+L+L+GDHLYRMDY  FIQ
Sbjct:  104 VRQYLWAFQEWDIDEYLILSGDHLYRMDYRDFIQ 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.521e-48
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK+RAKPAVPL   YRLIDIPVSNC+NS I+ +YVLTQFNSASLNRH++R Y  N  G+ ++GFVEVLAAQQ+PENP+WFQGTADA
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKQRAKPAVPLAGKYRLIDIPVSNCINSEITHVYVLTQFNSASLNRHIARTY--NFSGF-SDGFVEVLAAQQTPENPDWFQGTADA 103

HSP 2 Score: 48.521 bits (114), Expect = 6.521e-48
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            VRQYLWL  +  V  +L+L+GDHLYRMDY  F+
Sbjct:  104 VRQYLWLLSDWEVDYYLILSGDHLYRMDYRLFV 136
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.499e-48
Identity = 79/105 (75.24%), Postives = 91/105 (86.67%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVPL   YRLIDIP+SNC+NSNI+K+YVLTQFNSASLNRHLS+ Y  N+     +GFVEVLAAQQ+PE+P+WF+GTADA
Sbjct:    2 KRVLAIILGGGAGTRLYPLTKMRAKPAVPLAGKYRLIDIPISNCINSNINKMYVLTQFNSASLNRHLSQTY--NLSAGFGQGFVEVLAAQQTPESPSWFEGTADA 104

HSP 2 Score: 49.2914 bits (116), Expect = 8.499e-48
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            VR+Y WLF+E +V E+L+L+GD LYRMDY  FI
Sbjct:  105 VRKYQWLFQEWDVDEYLILSGDQLYRMDYSLFI 137
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_NOSP76.112e-5280.00Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]
GLGC_ANAVT6.640e-5179.05Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP6.640e-5179.05Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_SYNY34.244e-5079.05Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNP67.212e-5076.19Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE77.212e-5076.19Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNP24.610e-4978.10Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP87.831e-4977.14Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_CYAP46.521e-4876.19Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNPW8.499e-4875.24Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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