CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_DEIGD (Glucose-1-phosphate adenylyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.274e-22
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQ---SPENPNWFQGTADA 583
            VLG+IL GG G+RL PLT KR+KPAVP G  YR+ID  ++N +NS +  IYVLTQ+ + SL  H+ R +    G +  + F+ ++ AQ          W++GTADA
Sbjct:    5 VLGMILAGGQGSRLAPLTLKRSKPAVPFGGKYRIIDFAINNFINSGVFSIYVLTQYKAQSLTEHIQRGW--RFGTFLQDYFITLVPAQMYRYEELGAVWYRGTADA 108

HSP 2 Score: 30.0314 bits (66), Expect = 7.274e-22
Identity = 13/35 (37.14%), Postives = 20/35 (57.14%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            V Q L L +  N     + +GDH+Y+M+ E  +QA
Sbjct:  109 VYQNLHLIDNFNADYVAIFSGDHIYKMNVEHMLQA 143
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_PASMU (Glucose-1-phosphate adenylyltransferase OS=Pasteurella multocida GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.453e-22
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 2 
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            E  +  L +IL GG G+RLY LT KRAKPA+  G N R+ID  +SNCLNS +++I V+TQ+ + SL RHL   + S +   + E F+++L A+Q  ++  W++GTADA
Sbjct:   17 ELVKDTLVLILAGGRGSRLYELTDKRAKPALYFGGNRRIIDFALSNCLNSGLNRIGVVTQYAAHSLLRHLQNGW-SFLPAERGE-FIDMLPARQQIDDSTWYRGTADA 122

HSP 2 Score: 29.261 bits (64), Expect = 9.453e-22
Identity = 12/34 (35.29%), Postives = 22/34 (64.71%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEF-LVLAGDHLYRMDYERFI 683
            V Q + +  +H   ++ L+LAGDH+Y+ DY + +
Sbjct:  123 VYQNMAIIRDHYCPKYILILAGDHIYKQDYSQML 156
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SERP5 (Glucose-1-phosphate adenylyltransferase OS=Serratia proteamaculans (strain 568) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.458e-22
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +IL GG G+RL  LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ     +W++GTADA
Sbjct:   21 VALILAGGRGSRLKDLTSTRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNEEMNE-FVDLLPAQQRLSTEHWYKGTADA 120

HSP 2 Score: 32.3426 bits (72), Expect = 9.458e-22
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   ++    ++LAGDH+Y+MDY R +
Sbjct:  121 VYQNLDIIRRYDAEYVVILAGDHIYKMDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHISN (Glucose-1-phosphate adenylyltransferase OS=Rhizobium sp. (strain NGR234) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.461e-22
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R  +  +L GG G+RL  LT +RAKPAV  G   R+ID  +SN LNS I +I V TQ+ + SL RHL R + +     +NE F ++L A Q      W++GTADA
Sbjct:   10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-NFFRPERNESF-DILPASQRVSETQWYEGTADA 113

HSP 2 Score: 38.891 bits (89), Expect = 9.461e-22
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            V Q + + E+H V   ++LAGDH+Y+MDYE  +Q
Sbjct:  114 VFQNIDIIEDHGVEYMVILAGDHIYKMDYELMLQ 147
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHIME (Glucose-1-phosphate adenylyltransferase OS=Rhizobium meliloti GN=glgC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.461e-22
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R  +  +L GG G+RL  LT +RAKPAV  G   R+ID  +SN LNS I +I V TQ+ + SL RHL R + +     +NE F ++L A Q      W++GTADA
Sbjct:   10 ARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGW-NFFRPERNESF-DILPASQRVSETQWYEGTADA 113

HSP 2 Score: 38.891 bits (89), Expect = 9.461e-22
Identity = 16/34 (47.06%), Postives = 24/34 (70.59%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            V Q + + E+H V   ++LAGDH+Y+MDYE  +Q
Sbjct:  114 VYQNIDIIEDHGVEYMVILAGDHVYKMDYELMLQ 147
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_EXIS2 (Glucose-1-phosphate adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=glgC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.477e-22
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 2 
Query:  263 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            A ++V+ ++L GG G RL  LTK  AKPAV  G  YR+ID P+SNC NS I  + VLTQ+    LNR+L    A ++   +  G + +L   Q+    NW++GTA+A
Sbjct:    2 AKKNVVAMLLAGGEGKRLGALTKHTAKPAVAFGGKYRIIDFPLSNCTNSGIDTVGVLTQYEPLELNRYLGIGSAWDLD--RRNGGLTILPPYQAQNGKNWYEGTANA 106

HSP 2 Score: 33.4982 bits (75), Expect = 9.477e-22
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQ 686
            LVL+GDH+Y+MDYE+ I+
Sbjct:  123 LVLSGDHIYKMDYEKMIE 140
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_METCA (Glucose-1-phosphate adenylyltransferase OS=Methylococcus capsulatus GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.231e-21
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R  L +IL GG G+RL  LT+ RAKPAVP G  +R+ID P+SNC+NS I ++ VLTQ+ + SL RH+ + +    G      F++++ AQQ  +  +W+ GTADA
Sbjct:   16 TRQTLALILAGGRGSRLQKLTEWRAKPAVPFGGKFRIIDFPLSNCVNSGIRQVGVLTQYKADSLIRHIQQGWGFLRGELGE--FIDIMPAQQRLQE-SWYAGTADA 118

HSP 2 Score: 28.8758 bits (63), Expect = 1.231e-21
Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDY 671
            V Q L +  + +    ++LAGDH+Y+MDY
Sbjct:  119 VYQNLDIIRQRDPEFIMILAGDHVYKMDY 147
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_THEYD (Glucose-1-phosphate adenylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.231e-21
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 2 
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VL I+L GG G RL+PLT  R+KP+VP GA YR++D  +SN +NS I  IY+L Q+ S SL  H+ + +  +  G  ++ FV V+  Q     P WFQGTADA
Sbjct:    4 VLAIVLAGGKGERLFPLTSFRSKPSVPFGARYRIVDFVLSNLVNSQIYSIYLLVQYKSQSLIEHIRQNWFFSSVG--SDHFVTVVPPQMR-MGPEWFQGTADA 103

HSP 2 Score: 31.187 bits (69), Expect = 1.231e-21
Identity = 14/34 (41.18%), Postives = 20/34 (58.82%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            V Q + L +EHN    L+   DH+YRMD  + I+
Sbjct:  104 VFQNIGLIKEHNPDIVLIFGADHIYRMDIRQMIK 137
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHOE4 (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.232e-21
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VLGI+L GG G RLYPLT  RAKPAVP G  YRLID  +SN +N+   +I VLTQ+ S SL+RH+S+ +   + G+  E    V A Q+    P W+ G+ADA
Sbjct:    7 VLGIVLAGGEGKRLYPLTADRAKPAVPFGGAYRLIDFVLSNLVNAGYLRICVLTQYKSHSLDRHISQTW--RLSGFAGEYITPVPAQQRL--GPRWYTGSADA 105

HSP 2 Score: 26.1794 bits (56), Expect = 1.232e-21
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 3 
Query:  627 EFLVLAG-DHLYRMDYERFIQ 686
            E++V+ G DH+YRMD E+ +Q
Sbjct:  119 EYIVVFGADHVYRMDPEQMVQ 139
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_YERPP (Glucose-1-phosphate adenylyltransferase OS=Yersinia pestis (strain Pestoides F) GN=glgC PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.078e-21
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 2 
Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +IL GG G+RL  LT  RAKPAV  G  +R+ID  +SNCLNS + +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ      W++GTADA
Sbjct:   21 VALILAGGRGSRLKDLTATRAKPAVHFGGKFRIIDFALSNCLNSGVRRIGVITQYQSHTLVQHIQRGW-SFLNEEMNE-FVDLLPAQQRLSTEQWYKGTADA 120

HSP 2 Score: 32.3426 bits (72), Expect = 2.078e-21
Identity = 13/33 (39.39%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   ++    ++LAGDH+Y+MDY R +
Sbjct:  121 VCQNLDIIRRYDAEYIVILAGDHIYKMDYSRML 153
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_DEIGD7.274e-2245.28Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_PASMU9.453e-2246.30Glucose-1-phosphate adenylyltransferase OS=Pasteur... [more]
GLGC_SERP59.458e-2248.04Glucose-1-phosphate adenylyltransferase OS=Serrati... [more]
GLGC_RHISN9.461e-2244.34Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHIME9.461e-2244.34Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_EXIS29.477e-2242.99Glucose-1-phosphate adenylyltransferase OS=Exiguob... [more]
GLGC_METCA1.231e-2145.28Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_THEYD1.231e-2147.57Glucose-1-phosphate adenylyltransferase OS=Thermod... [more]
GLGC_RHOE41.232e-2150.49Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_YERPP2.078e-2147.06Glucose-1-phosphate adenylyltransferase OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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