CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALHS (Glucose-1-phosphate adenylyltransferase OS=Salmonella heidelberg (strain SL476) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADA 120
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALEP (Glucose-1-phosphate adenylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADA 120
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRVMLARQLPLESVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADA 120
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALCH (Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADA 120
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALA4 (Glucose-1-phosphate adenylyltransferase OS=Salmonella agona (strain SL483) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMKGENWYRGTADA 120
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHESR (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.525e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ V+TQ+ S SL RH+ R +    G +K E    VE+L A Q   + NW+QGTADA
Sbjct:   11 TRETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGW----GHFKKELGESVEILPASQR-YSENWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-21
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQA 689
            +VL+GDH+YRMDY   + A
Sbjct:  130 MVLSGDHVYRMDYAGLLAA 148
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHESM (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.525e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ V+TQ+ S SL RH+ R +    G +K E    VE+L A Q   + NW+QGTADA
Sbjct:   11 TRETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGW----GHFKKELGESVEILPASQR-YSENWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-21
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQA 689
            +VL+GDH+YRMDY   + A
Sbjct:  130 MVLSGDHVYRMDYAGLLAA 148
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHESA (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.525e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ V+TQ+ S SL RH+ R +    G +K E    VE+L A Q   + NW+QGTADA
Sbjct:   11 TRETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGW----GHFKKELGESVEILPASQR-YSENWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-21
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQA 689
            +VL+GDH+YRMDY   + A
Sbjct:  130 MVLSGDHVYRMDYAGLLAA 148
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHEON (Glucose-1-phosphate adenylyltransferase OS=Shewanella oneidensis GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.525e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ V+TQ+ S SL RH+ R +    G +K E    VE+L A Q   + NW+QGTADA
Sbjct:   11 TRETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGW----GHFKKELGESVEILPASQR-YSENWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-21
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQA 689
            +VL+GDH+YRMDY   + A
Sbjct:  130 MVLSGDHVYRMDYAGLLAA 148
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB9 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.525e-21
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ V+TQ+ S SL RH+ R +    G +K E    VE+L A Q   + NW+QGTADA
Sbjct:   11 TRETYALILAGGRGSRLHELTDWRAKPALYFGGKFRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVMRGW----GHFKKELGESVEILPASQR-YSENWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 3.525e-21
Identity = 11/19 (57.89%), Postives = 15/19 (78.95%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFIQA 689
            +VL+GDH+YRMDY   + A
Sbjct:  130 MVLSGDHVYRMDYAGLLAA 148
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_SALHS2.991e-2147.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALEP2.991e-2147.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALDC2.991e-2147.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALCH2.991e-2147.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALA42.991e-2147.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SHESR3.525e-2147.22Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESM3.525e-2147.22Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESA3.525e-2147.22Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEON3.525e-2147.22Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB93.525e-2147.22Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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