CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 2.395e-44
Identity = 83/163 (50.92%), Postives = 111/163 (68.10%), Query Frame = 2
Query:  119 AFSSSQLSGDKIFSKAVTGDRR------SERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADA 583
            +F + +L G K+    +   R       S++R ++       +SK  +   +    R+V  IILGGGAGTRL+PLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQ+NSASLNRHL+RAY SN  G+  +G+VEVLAA Q+P      WFQGTADA
Sbjct:   32 SFCNGELMGKKLNLSQLPNIRLRSSTNFSQKRILMSLNSVAGESKVQELETEKRDPRTVASIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNSNGLGF-GDGYVEVLAATQTPGESGKRWFQGTADA 193          

HSP 2 Score: 45.4394 bits (106), Expect = 2.395e-44
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQ+ WLFE+    ++ + L+L+GDHLYRMDY  FIQ
Sbjct:  194 VRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFIQ 230          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.111e-42
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 2
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE--NPNWFQGTADA 583
            +R+V+ IILGGGAGTRL+PLTK+RAKPAVP+G  YRLID+P+SNC+NS I+K+Y+LTQFNSASLNRH++RAY    G     G+VEVLAA Q+P      WFQGTA A
Sbjct:   46 ARTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNFGNGVTFESGYVEVLAATQTPGELGKRWFQGTAHA 153          

HSP 2 Score: 45.8246 bits (107), Expect = 8.111e-42
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQA 689
            VRQ+ WLFE+    ++ + L+L+GDHLYRMDY  F+Q+
Sbjct:  154 VRQFHWLFEDARSKDIEDVLILSGDHLYRMDYLHFVQS 191          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.167e-41
Identity = 72/107 (67.29%), Postives = 82/107 (76.64%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQS--PENPNWFQGTADA 583
            ++V  IILGGGAGTRL+PLT KRAKPAVP+G  YRLIDIP+SNC+NS I KI++LTQFNS SLNRHLSR Y    G    +GFVEVLAA Q+       WFQGTADA
Sbjct:   83 KNVASIILGGGAGTRLFPLTSKRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRTYNFGNGVNFGDGFVEVLAATQTSGDAGKKWFQGTADA 189          

HSP 2 Score: 48.1358 bits (113), Expect = 5.167e-41
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQ 686
            VRQ++W+FE+    NV   L+L+GDHLYRMDY  F+Q
Sbjct:  190 VRQFIWVFEDAKTKNVEHVLILSGDHLYRMDYMNFVQ 226          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.099e-39
Identity = 76/135 (56.30%), Postives = 94/135 (69.63%), Query Frame = 2
Query:  215 QAVSDSKNSQTCL--DPEAS-RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADACEAVFVA 604
            Q+V +S   +  L   P+A  ++V  I+LGGGAGTRL+PLT +RAKPAVP+G  YRLID+P+SNC+NS I KI++LTQFNS SLNRHL+R Y    G    +GFVEV AA Q+P      WFQGTADA    F A
Sbjct:   66 QSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVFAATQTPGESGKKWFQGTADAVRQFFWA 200          

HSP 2 Score: 41.2022 bits (95), Expect = 2.099e-39
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3
Query:  585 VRQYLWLFEEH---NVLEFLVLAGDHLYRMDYERFIQ 686
            VRQ+ W FE+    +V   ++L+GDHLYRMDY  F Q
Sbjct:  194 VRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQ 230          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.181e-39
Identity = 83/105 (79.05%), Postives = 90/105 (85.71%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+NS I+KIYVLTQFNSASLNRHLSR Y  N  G+ N+ FVEVLAAQQ+ ENP+WFQGTADA
Sbjct:    2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEITKIYVLTQFNSASLNRHLSRTY--NFTGF-NDEFVEVLAAQQTAENPSWFQGTADA 103          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 6.048e-39
Identity = 84/163 (51.53%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  128 SSQLSGDKIFSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEAS---------RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADA 583
            SS LS  K         R  + RP V    A++ SKN++  L  + S         ++V  IILGGG G +L+PLTK+ A PAVP+G  YR+IDIP+SNC+NS I+KI+VLTQFNSASLNRHL+R Y  N G    +GFVEVLAA Q+P      WFQGTADA
Sbjct:   41 SSDLSSKKF--------RNRKLRPGVA--YAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATPAVPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGN-GINFGDGFVEVLAATQTPGEAGKKWFQGTADA 192          

HSP 2 Score: 44.2838 bits (103), Expect = 6.048e-39
Identity = 18/37 (48.65%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQ 686
            VR++LW+FE+    N+   ++L+GDHLYRM+Y  F+Q
Sbjct:  193 VRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQ 229          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL IILGGGAGTRLYPLTK RAKPAVPL   YRLIDIPVSNC+N+ I KIYVLTQFNSASLNRHL+R Y  N  G+ ++GFVEVLAAQQ+ ENP+WFQGTADA
Sbjct:    2 KKVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINAEILKIYVLTQFNSASLNRHLTRTY--NFTGF-HDGFVEVLAAQQTTENPSWFQGTADA 103          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.163e-37
Identity = 71/113 (62.83%), Postives = 84/113 (74.34%), Query Frame = 2
Query:  251 LDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADA 583
            +DP+   +V  IILGGG G +L+PLT + A PAVP+G  YRLIDIP+SNC+NS I+KI+VLTQFNSASLNRHL+R Y  N G     GFVEVLAA Q+P      WFQGTADA
Sbjct:   86 VDPQ---NVAAIILGGGNGAKLFPLTMRAATPAVPVGGCYRLIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTYFGN-GINFGGGFVEVLAATQTPGEAGKKWFQGTADA 194          

HSP 2 Score: 45.4394 bits (106), Expect = 4.163e-37
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQA 689
            VR++LW+FE+    N+   L+L+GDHLYRM+Y  F+Q+
Sbjct:  195 VRKFLWVFEDAKNRNIENILILSGDHLYRMNYMDFVQS 232          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.200e-36
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADA 583
            + V  +ILGGG GT+L+PLT + A PAVP+G  YRLIDIP+SNC+NS I+KI+VLTQ+NSA LNRH++R Y  N G    +GFVEVLAA Q+P      WFQGTADA
Sbjct:   36 KDVAAVILGGGEGTKLFPLTSRTATPAVPVGGCYRLIDIPMSNCINSAINKIFVLTQYNSAPLNRHIARTYFGN-GVSFGDGFVEVLAATQTPGEAGKKWFQGTADA 141          

HSP 2 Score: 43.5134 bits (101), Expect = 1.200e-36
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLEFLVLAGDHLYRMDYERFIQ 686
            VR+++W+FE+    N+   +VL+GDHLYRMDY   +Q
Sbjct:  142 VRKFIWVFEDAKNKNIENIVVLSGDHLYRMDYMELVQ 178          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.726e-35
Identity = 74/160 (46.25%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  128 SSQLSGDKIFSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPN--WFQGTADACEAVFV 601
            ++Q  G  +    +T D   E  P   S          Q   DP+A   V  +ILGGG GTRL+PLT +RAKPAVP+G  YRLID+P+SNC+NS I KI++LTQFNS SLNRHL+     N  G+  +GFVEVLA  Q+P +    WFQ      E ++V
Sbjct:   48 TTQQRGRNVTPAVLTRDINKEMLPFEES------MFEEQPTADPKA---VASVILGGGVGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLATYNFGNGVGF-GDGFVEVLAGTQTPGDGRKMWFQAADAVREFIWV 197          

HSP 2 Score: 43.5134 bits (101), Expect = 3.726e-35
Identity = 18/37 (48.65%), Postives = 27/37 (72.97%), Query Frame = 3
Query:  585 VRQYLWLFEEH---NVLEFLVLAGDHLYRMDYERFIQ 686
            VR+++W+FE     NV   ++L+GDHLYRM+Y  F+Q
Sbjct:  191 VREFIWVFENQKNKNVEHIIILSGDHLYRMNYMDFVQ 227          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGL1_ARATH2.395e-4450.92Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_SOLTU8.111e-4265.74Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH5.167e-4167.29Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU2.099e-3956.30Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_CYAP73.181e-3979.05Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL3_ARATH6.048e-3951.53Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_CYAA51.209e-3877.14Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL4_ARATH4.163e-3762.83Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL1_SOLTU1.200e-3661.68Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU3.726e-3546.25Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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