CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_STRMU (Glucose-1-phosphate adenylyltransferase OS=Streptococcus mutans GN=glgC PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.147e-18
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +L +IL GG GTRL  LT+  AKPAV  G  YR+ID  +SNC NS I+ + ++TQ+   +LN H+    +  + G  N G   +L    + E   WFQGT+ A
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGINNVGIITQYQPLALNSHIGNGSSWGLDGI-NSG-ATILQPYSATEGNRWFQGTSHA 105          

HSP 2 Score: 30.8018 bits (68), Expect = 1.147e-18
Identity = 10/18 (55.56%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFIQ 686
            L+L+GDH+Y+MDY+  +Q
Sbjct:  122 LILSGDHIYKMDYDDMLQ 139          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_STRU0 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=glgC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.147e-18
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +L +IL GG GTRL  LT+  AKPAV  G  YR+ID  +SNC NS I  + V+TQ+    LN H+    +  + G  N G V +L    + E   WF+GT+ A
Sbjct:    5 MLALILAGGQGTRLGKLTQNIAKPAVQFGGRYRIIDFALSNCANSGIDNVGVITQYQPLVLNSHIGNGSSWGLEGI-NRG-VTILQPFSATEGNKWFEGTSHA 105          

HSP 2 Score: 32.7278 bits (73), Expect = 1.147e-18
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFIQ 686
            L+L+GDH+Y+MDYE  +Q
Sbjct:  122 LILSGDHIYKMDYEEMLQ 139          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_PROAC (Glucose-1-phosphate adenylyltransferase OS=Propionibacterium acnes GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 54/104 (51.92%), Postives = 67/104 (64.42%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VL I+L GG G RL PLT  RAKPAVP G  YRLID  +SN  NS +++I VLTQ+ S SL+RH+S  +  S M G     +V  + AQQ    P W+QG+ADA
Sbjct:    8 VLSIVLAGGEGKRLMPLTMDRAKPAVPFGGTYRLIDFVLSNLANSGLTQIAVLTQYKSHSLDRHISITWRMSTMLG----SYVTPVPAQQR-LGPRWYQGSADA 106          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_LACLS (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +LG+IL GG GTRL  LTK  AKPAVP G  YR+ID  +SNC NSN+  + V+TQ+   +LN H+       + G  N G V +L    S E   WF+GT+ A
Sbjct:    5 MLGLILAGGQGTRLGKLTKDVAKPAVPFGGRYRIIDFALSNCANSNVKNVGVITQYQPLTLNAHIGNGAPWGLNGI-NSG-VTILQPYSSQEGSKWFEGTSHA 105          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_LACLA (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis GN=glgC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +LG+IL GG GTRL  LTK  AKPAVP G  YR+ID  +SNC NSN+  + V+TQ+   +LN H+       + G  N G V +L    S E   WF+GT+ A
Sbjct:    5 MLGLILAGGQGTRLGKLTKDVAKPAVPFGGRYRIIDFALSNCANSNVKNVGVITQYQPLTLNAHIGNGAPWGLNGI-NSG-VTILQPYSSQEGSKWFEGTSHA 105          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_THEP1 (Glucose-1-phosphate adenylyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.487e-18
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  272 SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + + +IL GG GTRL  LT++ AKPA+P G  YRLID  +SNC+NS I ++ VLTQ+    L++H+      ++   + +G VE+L         +W++GTA+A
Sbjct:    3 NTVAMILAGGQGTRLGVLTERVAKPAIPFGGKYRLIDFTLSNCVNSGIYRVGVLTQYRPHVLSKHIGIGRPWDLD--RKDGGVEILPPYVGRHESDWYKGTANA 104          

HSP 2 Score: 29.6462 bits (65), Expect = 1.487e-18
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L   EE++    L+L+GDH+Y M+Y   I
Sbjct:  105 VYQNLEFLEENDAELVLILSGDHVYAMNYNDLI 137          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRASN (Glucose-1-phosphate adenylyltransferase OS=Frankia sp. (strain EAN1pec) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.488e-18
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY-ASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            S  VLG++L GGAG RL PLT  RAKPAVP G  YRL+D  +SN +N    +I VLTQ+ S SL+RH++  +  SN+ G     +V  + AQQ    P WF G+ADA
Sbjct:    3 SPRVLGLVLAGGAGKRLAPLTADRAKPAVPFGGIYRLVDFVLSNLVNGGYLRIAVLTQYKSHSLDRHITTTWRMSNLLG----NYVTPVPAQQR-LGPQWFAGSADA 104          

HSP 2 Score: 21.557 bits (44), Expect = 1.488e-18
Identity = 7/17 (41.18%), Postives = 11/17 (64.71%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFI 683
            +V   DH+YRMD  + +
Sbjct:  121 VVFGADHVYRMDPRQMV 137          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_STRA5 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype V GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.939e-18
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +L +IL GG GTRL  LT+  AKPAV  G  YR+ID  +SNC NS I+ + V+TQ+    LN H+    +  + G   +  V VL    + E   WFQGT+ A
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGINNVGVITQYQPLELNTHIGNGSSWGLDGI--DSGVTVLQPYSATEGNRWFQGTSHA 105          

HSP 2 Score: 28.8758 bits (63), Expect = 1.939e-18
Identity = 9/18 (50.00%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFIQ 686
            L+L+GDH+Y+M+Y+  +Q
Sbjct:  122 LILSGDHIYKMNYDDMLQ 139          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_STRA1 (Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype Ia GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.939e-18
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +L +IL GG GTRL  LT+  AKPAV  G  YR+ID  +SNC NS I+ + V+TQ+    LN H+    +  + G   +  V VL    + E   WFQGT+ A
Sbjct:    5 MLALILAGGQGTRLGKLTQSIAKPAVQFGGRYRIIDFALSNCANSGINNVGVITQYQPLELNTHIGNGSSWGLDGI--DSGVTVLQPYSATEGNRWFQGTSHA 105          

HSP 2 Score: 28.8758 bits (63), Expect = 1.939e-18
Identity = 9/18 (50.00%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFIQ 686
            L+L+GDH+Y+M+Y+  +Q
Sbjct:  122 LILSGDHIYKMNYDDMLQ 139          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_KOCRD (Glucose-1-phosphate adenylyltransferase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=glgC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.516e-18
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + VL I+L GG G RL PLT+ RAKPAVP    YRLID  +SN +NS   +I VLTQ+ S SL+RHLS  +  ++ +G Y     V  + AQQ     +WF G+A+A
Sbjct:    5 KKVLAIVLAGGEGKRLMPLTEDRAKPAVPFAGGYRLIDFALSNLVNSGYLQIVVLTQYKSHSLDRHLSETWRLSTQLGNY-----VTSVPAQQR-RGKDWFLGSANA 105          

HSP 2 Score: 23.483 bits (49), Expect = 2.516e-18
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFIQ 686
            +V+  DH+YRMD+   ++
Sbjct:  122 VVVGADHVYRMDFADMVE 139          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_STRMU1.147e-1841.75Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRU01.147e-1842.72Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_PROAC1.389e-1851.92Glucose-1-phosphate adenylyltransferase OS=Propion... [more]
GLGC_LACLS1.389e-1846.60Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_LACLA1.389e-1846.60Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC_THEP11.487e-1840.38Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_FRASN1.488e-1849.53Glucose-1-phosphate adenylyltransferase OS=Frankia... [more]
GLGC_STRA51.939e-1842.72Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_STRA11.939e-1842.72Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_KOCRD2.516e-1847.66Glucose-1-phosphate adenylyltransferase OS=Kocuria... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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