CF417165 | Citrus Genome Database

Overview


Name	CF417165
Unique Name	CF417165
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	690

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_THELT (Glucose-1-phosphate adenylyltransferase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.675e-16
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 2

Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            R VL +IL GG G RL  LT+K AKPAVP G  YRLID  +SNC+NS I  + VLTQ+    LN H++     ++   + +G V +L          W++GTA+A
Sbjct:    2 RKVLALILAGGHGKRLGVLTEKIAKPAVPFGGKYRLIDFTLSNCVNSGIYHVGVLTQYRPHLLNNHINIGRPWDLD--RKKGGVTILPPYLGGV-AGWYRGTANA 103

HSP 2 Score: 27.335 bits (59), Expect = 1.675e-16
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 3

Query:  633 LVLAGDHLYRMDYERFI 683
            L+L+GDH+Y MDY   I
Sbjct:  120 LILSGDHVYAMDYNDII 136

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACWK (Glucose-1-phosphate adenylyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVNGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACHK (Glucose-1-phosphate adenylyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACCZ (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACCR (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACCQ (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain Q1) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACC1 (Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACAN (Glucose-1-phosphate adenylyltransferase OS=Bacillus anthracis GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.183e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 30.0314 bits (66), Expect = 2.183e-16
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3

Query:  594 YLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            YL  +E   VL   +L+GDH+Y+MDY + +
Sbjct:  114 YLSQYEPEYVL---ILSGDHIYKMDYSKML 140

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_DESRM (Glucose-1-phosphate adenylyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.833e-16
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 2

Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RL  LTKK AKPAVP G  YR+ID  +SNC NS    + VLTQ+   +LN ++     S+    +  G V VL          W++GTA+A
Sbjct:    4 KECVAMLLAGGQGSRLGVLTKKLAKPAVPFGGRYRIIDFTLSNCNNSGFDTVGVLTQYQPLALNTYI--GIGSHWDLDRKNGGVTVLPPFVKEMGGEWYKGTANA 106

HSP 2 Score: 28.8758 bits (63), Expect = 2.833e-16
Identity = 10/29 (34.48%), Postives = 19/29 (65.52%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDY 671
            + Q +   +++     L+L+GDH+Y+MDY
Sbjct:  107 IYQNIEFVDQYKPKYILILSGDHIYKMDY 135

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACAH (Glucose-1-phosphate adenylyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=glgC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.837e-16
Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 2

Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + ++L GG G+RL  LTK  AKPAVP G  YR+ID  +SNC NS I  + +LTQ+    L+ ++    A ++   +  G V VL          W+ GTA A
Sbjct:    8 VAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLD--RVSGGVTVLPPYAESSGVKWYTGTASA 107

HSP 2 Score: 29.6462 bits (65), Expect = 2.837e-16
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 3

Query:  633 LVLAGDHLYRMDYERFI 683
            L+L+GDH+Y+MDY + +
Sbjct:  124 LILSGDHIYKMDYSKML 140

The following BLAST results are available for this feature:

BLAST of CF417165 vs. ExPASy Swiss-Prot

BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307


Match Name	E-value	Identity	Description
GLGC_THELT	1.675e-16	43.81	Glucose-1-phosphate adenylyltransferase OS=Thermot...	[more]
GLGC_BACWK	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACHK	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACCZ	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACCR	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACCQ	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACC1	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_BACAN	2.183e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]
GLGC_DESRM	2.833e-16	40.00	Glucose-1-phosphate adenylyltransferase OS=Desulfo...	[more]
GLGC_BACAH	2.837e-16	39.22	Glucose-1-phosphate adenylyltransferase OS=Bacillu...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC