CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL2_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Zea mays GN=AGP2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.233e-35
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN--EGFVEVLAAQQSP-ENPNWFQGTADA 583
            V  +ILGGG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVLAA Q P E   WFQGTADA
Sbjct:   87 VAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFQGTADA 189          

HSP 2 Score: 38.1206 bits (87), Expect = 8.233e-35
Identity = 17/38 (44.74%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  585 VRQYLWLFEE---HNVLE-FLVLAGDHLYRMDYERFIQ 686
            VR+++W+ E+   H  +E  L+L+GD LYRMDY   +Q
Sbjct:  190 VRKFIWVLEDYYKHKAIEHILILSGDQLYRMDYMELVQ 227          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.819e-34
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN--EGFVEVLAAQQSP-ENPNWFQGTADA 583
            V  +ILGGG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVLAA Q P E   WF+GTADA
Sbjct:   90 VAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFRGTADA 192          

HSP 2 Score: 38.5058 bits (88), Expect = 1.819e-34
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 3
Query:  564 FRVQLMXVRQYLWLFEEH----NVLEFLVLAGDHLYRMDYERFIQ 686
            FR     VR+++W+ E++    ++   L+L+GD LYRMDY   +Q
Sbjct:  186 FRGTADAVRKFIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQ 230          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.819e-34
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN--EGFVEVLAAQQSP-ENPNWFQGTADA 583
            V  +ILGGG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVLAA Q P E   WF+GTADA
Sbjct:   91 VAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFRGTADA 193          

HSP 2 Score: 38.5058 bits (88), Expect = 1.819e-34
Identity = 17/45 (37.78%), Postives = 28/45 (62.22%), Query Frame = 3
Query:  564 FRVQLMXVRQYLWLFEEH----NVLEFLVLAGDHLYRMDYERFIQ 686
            FR     VR+++W+ E++    ++   L+L+GD LYRMDY   +Q
Sbjct:  187 FRGTADAVRKFIWVLEDYYKHKSIEHILILSGDQLYRMDYMELVQ 231          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL3_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Fragment) OS=Triticum aestivum GN=AGA.7 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.963e-33
Identity = 69/114 (60.53%), Postives = 82/114 (71.93%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN--EGFVEVLAAQQSP-ENPNWFQGTADACEAVFVAL 607
            V  +ILGGG GT+L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V+TQFNSASLNRH+ R Y   +GG  N  +G VEVLAA Q P E   WF+GTADA   +   L
Sbjct:   71 VAAVILGGGTGTQLFPLTSTRATPAVPIGGCYRLIDIPMSNCFNSGINKIFVMTQFNSASLNRHIHRTY---LGGGINFTDGSVEVLAATQMPGEAAGWFRGTADAWRKIIWVL 181          

HSP 2 Score: 34.6538 bits (78), Expect = 1.963e-33
Identity = 14/37 (37.84%), Postives = 24/37 (64.86%), Query Frame = 3
Query:  588 RQYLWLFEEH----NVLEFLVLAGDHLYRMDYERFIQ 686
            R+ +W+ E++    ++   L+L+GD LYRMDY   +Q
Sbjct:  175 RKIIWVLEDYYKNKSIEHILILSGDQLYRMDYMELVQ 211          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGL1_MAIZE (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Zea mays GN=SH2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.247e-32
Identity = 74/152 (48.68%), Postives = 97/152 (63.82%), Query Frame = 2
Query:  146 DKIFSKAVTGDRRSERRPIVVSPQAVSDSKNSQTCLD----PEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYK-NEGFVEVLAAQQSPENP-NWFQGTADA 583
            +K       G R +     +++  A  ++ +SQT        +A+R V  IILGGG G++L+PLT  RA PAVP+G  YRLIDIP+SNC NS I+KI+V++QFNS SLNRH+ R Y    GG    +G V+VLAA Q PE P  WFQGTAD+
Sbjct:   38 EKALRNRCFGGRVAATTQCILTSDACPETLHSQTQSSRKNYADANR-VSAIILGGGTGSQLFPLTSTRATPAVPVGGCYRLIDIPMSNCFNSGINKIFVMSQFNSTSLNRHIHRTYLE--GGINFADGSVQVLAATQMPEEPAGWFQGTADS 186          

HSP 2 Score: 33.8834 bits (76), Expect = 1.247e-32
Identity = 12/38 (31.58%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  585 VRQYLWLFEEH----NVLEFLVLAGDHLYRMDYERFIQ 686
            +R+++W+ E++    ++   ++L+GD LYRM+Y   +Q
Sbjct:  187 IRKFIWVLEDYYSHKSIDNIVILSGDQLYRMNYMELVQ 224          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_THIDA (Glucose-1-phosphate adenylyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=glgC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.140e-26
Identity = 60/117 (51.28%), Postives = 76/117 (64.96%), Query Frame = 2
Query:  239 SQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            ++  L  E +R  L ++L GG G+RL  LT  RAKPAVP+G  YR+ID P+SNC+NS I +I VLTQ+ S SL RHL RA+    G  + E   FVE+L AQQ      W+QGTADA
Sbjct:   16 TEPTLVTELTRKTLALVLAGGEGSRLKDLTAWRAKPAVPIGGKYRIIDFPLSNCVNSGIRRIGVLTQYKSHSLIRHLQRAW----GLMRTEVGEFVEILPAQQRTHKKEWYQGTADA 128          

HSP 2 Score: 30.4166 bits (67), Expect = 1.140e-26
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 3
Query:  591 QYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            Q L + + H+    LVL GDH+Y MDY + +
Sbjct:  131 QNLDIMQRHHPEYVLVLGGDHVYTMDYTQML 161          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_NITEU (Glucose-1-phosphate adenylyltransferase OS=Nitrosomonas europaea GN=glgC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.218e-26
Identity = 52/106 (49.06%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R+ L +IL GG GTRL  LT  RAKPAVP G  +R+ID  +SNC+NS + +I V+TQ+ + SL RH+ R ++   G ++   F+E+L AQQ  E   W+QGTADA
Sbjct:   20 TRNTLALILAGGRGTRLKNLTDWRAKPAVPFGGKFRIIDFTLSNCVNSGVRRIGVVTQYKAQSLIRHIQRGWSFLDGRFQE--FIELLPAQQRTEEGTWYQGTADA 123          

HSP 2 Score: 33.4982 bits (75), Expect = 7.218e-26
Identity = 15/33 (45.45%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   HN    L+L GDH+Y+MDY R +
Sbjct:  124 VFQNLDILRTHNPGYVLILGGDHIYKMDYGRIL 156          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BURXL (Glucose-1-phosphate adenylyltransferase OS=Burkholderia xenovorans (strain LB400) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.592e-25
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  R+ L I+L GG GTRL PLT KR KPAV  G  YR+ID  +SNCLNS I +I V+TQ+ + SL RHL R ++   G +    F+++  AQQ  E  +W++GTADA
Sbjct:    9 DLQRTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGWSFLRGEFGE--FIDLWPAQQRVEGAHWYRGTADA 114          

HSP 2 Score: 31.5722 bits (70), Expect = 1.592e-25
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFI 683
            +VLAGDH+Y+MDY R I
Sbjct:  131 VVLAGDHIYKMDYTRMI 147          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BURPP (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=glgC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.697e-25
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  R+ L I+L GG GTRL PLT KR KPAV  G  YR+ID  +SNCLNS I +I V+TQ+ + SL RHL R + S + G   E F+++  AQQ  E  +W++GTADA
Sbjct:    9 DLQRTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHLQRGW-SFLRGEMGE-FIDLWPAQQRVEGAHWYRGTADA 114          

HSP 2 Score: 31.5722 bits (70), Expect = 2.697e-25
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFI 683
            +VLAGDH+Y+MDY R I
Sbjct:  131 VVLAGDHIYKMDYTRMI 147          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.947e-25
Identity = 51/102 (50.00%), Postives = 72/102 (70.59%), Query Frame = 2
Query:  278 LGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            LG++L GGAG RLYPLT+ RAKPAV  G  YR+IDI +SNC+NS + ++Y+LTQ+ + SLNRH+   ++  +G    E F+E+L   +   + NW+ GTADA
Sbjct:    5 LGVLLAGGAGERLYPLTRDRAKPAVNFGGIYRIIDITLSNCINSGLRRVYILTQYKALSLNRHIREGWSGIVGNELGE-FIEILPPMKR-VSENWYMGTADA 104          

HSP 2 Score: 26.9498 bits (58), Expect = 5.947e-25
Identity = 8/14 (57.14%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYE 674
            L+L+GDH+Y+M+Y+
Sbjct:  121 LILSGDHIYKMNYD 134          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGL2_MAIZE8.233e-3565.09Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT1.819e-3464.15Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU1.819e-3464.15Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_WHEAT1.963e-3360.53Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_MAIZE1.247e-3248.68Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGC_THIDA1.140e-2651.28Glucose-1-phosphate adenylyltransferase OS=Thiobac... [more]
GLGC_NITEU7.218e-2649.06Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_BURXL1.592e-2549.07Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_BURPP2.697e-2550.93Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_ACIBL5.947e-2550.00Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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