CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BACSU (Glucose-1-phosphate adenylyltransferase OS=Bacillus subtilis GN=glgC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.687e-16
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RL  LTK  AKPAV  G  YR+ID  +SNC NS I  + +LTQ+    LN ++    A ++  Y   G V VL          W++GTA +
Sbjct:    3 KQCVAMLLAGGKGSRLSGLTKNMAKPAVSFGGKYRIIDFTLSNCSNSGIDTVGILTQYQPLELNSYIGIGSAWDLDRY--NGGVTVLPPYAESSEVKWYKGTASS 105          

HSP 2 Score: 28.8758 bits (63), Expect = 3.687e-16
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  633 LVLAGDHLYRMDYERFI 683
            L+L+GDH+Y+MDY + +
Sbjct:  122 LILSGDHIYKMDYGKML 138          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHOP5 (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.784e-16
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 2
Query:  245 TCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            T ++P  +R  +  +L GG G+RL  LT +RAKPAV  G   R+ID  +SN LNS I +I V TQ+ + SL RHL   + +     +NE F ++L A Q      W+ GTADA
Sbjct:    3 TGIEPPFARHAMAYVLAGGRGSRLMELTDRRAKPAVYFGGKSRIIDFALSNALNSGIRRIAVATQYKAHSLIRHLQHGW-NFFRPERNESF-DILPASQRVSEELWYLGTADA 113          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPB (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisB18) GN=glgC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R  +  +L GG G+RL  LT +RAKPAV  G   R+ID  +SN LNS I +I V TQ+ + SL RHL   + +     +NE F ++L A Q      W+ GTADA
Sbjct:   10 ARHAMAYVLAGGRGSRLMELTDRRAKPAVYFGGKSRIIDFALSNALNSGIRRIAVATQYKAHSLIRHLQHGW-NFFRPERNESF-DILPASQRVSEELWYLGTADA 113          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.164e-14
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RL  LT+   KPAV     YR+ID  +SNC NSNI  + VLTQ+   +LN +++   A ++      G + +L         +W++GTA+A
Sbjct:    4 KECIAMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYINMGSAWDLNCL--NGGIHILPPFVGEAQGSWYKGTANA 106          

HSP 2 Score: 28.1054 bits (61), Expect = 3.164e-14
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  615 HNVLEFLVLAGDHLYRMDY 671
            +N    L+L+GDH+Y+MDY
Sbjct:  117 YNPEYILILSGDHIYQMDY 135          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.164e-14
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RL  LT+   KPAV     YR+ID  +SNC NSNI  + VLTQ+   +LN +++   A ++      G + +L         +W++GTA+A
Sbjct:    4 KECIAMLLAGGQGSRLGCLTRNIPKPAVSFAGKYRIIDFSLSNCSNSNIDTVGVLTQYKPFALNTYINMGSAWDLNCL--NGGIHILPPFVGEAQGSWYKGTANA 106          

HSP 2 Score: 28.1054 bits (61), Expect = 3.164e-14
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  615 HNVLEFLVLAGDHLYRMDY 671
            +N    L+L+GDH+Y+MDY
Sbjct:  117 YNPEYILILSGDHIYQMDY 135          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FUSNN (Glucose-1-phosphate adenylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=glgC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.542e-14
Identity = 42/106 (39.62%), Postives = 62/106 (58.49%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQ-QSPENPNWFQGTADA 583
            + ++ +IL GG GTRL  LT+  AKPAV  G  YR+ID  ++NC NS I  + VLTQ+    LN H+ R    ++   + +G V VL    +  +   W++GTA+A
Sbjct:    6 KRIIAMILAGGQGTRLKELTEDLAKPAVAFGGKYRIIDFTLTNCSNSGIDTVGVLTQYEPRILNNHIGRGSPWDLD--RMDGGVTVLQPHTRKNDEKGWYKGTANA 109          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_CLOD6 (Glucose-1-phosphate adenylyltransferase OS=Clostridium difficile (strain 630) GN=glgC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.626e-14
Identity = 44/105 (41.90%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +L +IL GG G+RL   TK+ AKPAV  G  YR+ID  +SNC NS I  + VLTQ+    LN H+     S+    +  G V VL    + +  NW+ GTA A
Sbjct:    3 KEMLAMILAGGQGSRLGVFTKRIAKPAVSFGGKYRIIDFVLSNCSNSGIDTVGVLTQYRPLILNSHI--GMGSHWDLDRINGGVYVLQPFMNEKEGNWYNGTAHA 105          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_BACSU3.687e-1638.10Glucose-1-phosphate adenylyltransferase OS=Bacillu... [more]
GLGC_RHOP53.784e-1642.48Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHOPB5.464e-1543.40Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_DESHY3.164e-1435.24Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHD3.164e-1435.24Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_FUSNN3.542e-1439.62Glucose-1-phosphate adenylyltransferase OS=Fusobac... [more]
GLGC_CLOD64.626e-1441.90Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
back to top