CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.007e-24
Identity = 51/106 (48.11%), Postives = 68/106 (64.15%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R  L +I+ GG G RL  LT  R KPAVP G  +RLID P+SNC+NS I +I VLTQ+ + SL +H+ R +    G +    FVE++ AQQ  + P W+ GTADA
Sbjct:   14 TRDTLALIMAGGRGGRLSNLTDWRTKPAVPFGGKFRLIDFPLSNCINSGIRRIEVLTQYKAHSLIQHIQRGWGFLRGEFGE--FVELVPAQQRMDKPLWYAGTADA 117

HSP 2 Score: 33.8834 bits (76), Expect = 1.007e-24
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDY 671
            V Q + + + HN    LVLAGDH+Y+MDY
Sbjct:  118 VYQNIDIIKAHNPSYVLVLAGDHVYKMDY 146
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_BURP8 (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-24
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2 
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +   + L I+L GG GTRL PLT KR KPAV  G  YR+ID  +SNCLNS I +I V+TQ+ + SL RH+ R +    G +    F+++  AQQ  E  +W++GTADA
Sbjct:    9 DLQHTTLAIVLAGGRGTRLGPLTNKRVKPAVHFGGKYRIIDFALSNCLNSGIRRIAVVTQYKAHSLLRHVQRGWGFLRGEFNE--FIDLWPAQQRVEGAHWYRGTADA 114

HSP 2 Score: 31.187 bits (69), Expect = 1.311e-24
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDYERFI 683
            +VLAGDH+Y+MDY R +
Sbjct:  131 VVLAGDHIYKMDYTRMV 147
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-24
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 2 
Query:  230 SKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +KN         +R  L +IL GG G+RL  LT  RAKPAVP+G  +R+ID P+SNC+NS + +I VLTQ+ + SL RH+ + +   M GY  E FVE++ A Q  E+ +W+ GTADA
Sbjct:    2 TKNYSARFVSRLTRDTLALILAGGRGSRLKNLTAWRAKPAVPIGGKFRIIDFPLSNCVNSGVRRICVLTQYKAHSLVRHIQQGWGF-MRGYLGE-FVELMPASQRIED-SWYAGTADA 116

HSP 2 Score: 33.4982 bits (75), Expect = 1.311e-24
Identity = 15/29 (51.72%), Postives = 19/29 (65.52%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDY 671
            V Q L +   HN    L+LAGDH+Y+MDY
Sbjct:  117 VYQNLDIVRSHNPEYVLILAGDHVYKMDY 145
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.219e-24
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 2 
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +R  L ++L GG G+RL  LTK RAKPAVP G  YR+ID  +SNC+NS I KI VLTQ+ S SL RH+ RA+  +   Y+   FVE+L AQQ  +   W++GTADA
Sbjct:   12 DLTRKTLALVLAGGEGSRLKDLTKWRAKPAVPFGGKYRIIDFVLSNCVNSGIRKIGVLTQYKSHSLIRHVQRAW--SFMRYEVGEFVELLPAQQRVDK-GWYKGTADA 116

HSP 2 Score: 30.0314 bits (66), Expect = 2.219e-24
Identity = 13/31 (41.94%), Postives = 17/31 (54.84%), Query Frame = 3 
Query:  591 QYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            Q L +   H     LVL GDH+Y MDY + +
Sbjct:  119 QNLDIMRRHTPDYVLVLGGDHIYSMDYSKML 149
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SALAR (Glucose-1-phosphate adenylyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.757e-24
Identity = 57/121 (47.11%), Postives = 76/121 (62.81%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN +  L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDRLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SLFSEEMNE-FVDLLPAQQRMQGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 3.757e-24
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.077e-23
Identity = 50/105 (47.62%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            R  + +IL GG G+RL PLT+ RAKPAVP+G  YR+ID  +SNCLNS++ ++ +LTQ+ + SL+RH++ A+ +       E F++V+  QQ  ++ NW+QGTADA
Sbjct:   23 RQTVTVILAGGRGSRLEPLTRDRAKPAVPIGGAYRIIDFVLSNCLNSDMRRLLLLTQYKAQSLDRHINVAWRNYFCRELGE-FIDVVPPQQRIDD-NWYQGTADA 125

HSP 2 Score: 30.8018 bits (68), Expect = 1.077e-23
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q ++  E       ++LAGDHLY+M+YE  +
Sbjct:  126 VYQNIYAIEREAPEYVVILAGDHLYKMNYESMV 158
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.078e-23
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 2 
Query:  260 EASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +R+ + +IL GG GTRL  LT  RAKPAVP G  +R+ID P+SNC+NS I +I V TQ+ + SL  H+ + +    G ++   F+E+L AQQ  E  +W+QGTADA
Sbjct:   12 QITRNSIAMILAGGRGTRLRQLTDWRAKPAVPFGGKFRIIDFPLSNCVNSGIRRIGVATQYKAQSLISHIQQGWGFLDGRFQE--FIELLPAQQRTEE-SWYQGTADA 116

HSP 2 Score: 32.3426 bits (72), Expect = 1.078e-23
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q + +   HN    L+L GDH+Y+MDY + +
Sbjct:  117 VYQNIDILRSHNPDYVLILGGDHVYKMDYAKLL 149
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC2_ALHEH (Glucose-1-phosphate adenylyltransferase 2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.403e-23
Identity = 54/106 (50.94%), Postives = 71/106 (66.98%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R+ L +IL GG G+RL  LT  RAKPAVP G  +R+ID  +SNC+NS I +I VLTQ+ + SL RHL   + S  G +    FVE+L AQQ  E  +W++GTADA
Sbjct:   14 TRNTLVLILAGGRGSRLMDLTTWRAKPAVPFGGKFRIIDFTLSNCINSGIRRIGVLTQYKAHSLIRHLRLGWGSLRGDFGE--FVEILPAQQRTEG-SWYRGTADA 116

HSP 2 Score: 30.4166 bits (67), Expect = 1.403e-23
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDY 671
            V Q L +   H+    L+LAGDH+Y+MDY
Sbjct:  117 VYQSLDIVRMHDPDYVLILAGDHVYKMDY 145
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHISS (Glucose-1-phosphate adenylyltransferase OS=Shigella sonnei (strain Ss046) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHIFL (Glucose-1-phosphate adenylyltransferase OS=Shigella flexneri GN=glgC PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC1_ALHEH1.007e-2448.11Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_BURP81.311e-2447.22Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_NITOC1.311e-2446.61Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_THICR2.219e-2451.85Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_SALAR3.757e-2447.11Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_RHOBA1.077e-2347.62Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_NITMU1.078e-2347.22Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC2_ALHEH1.403e-2350.94Glucose-1-phosphate adenylyltransferase 2 OS=Alkal... [more]
GLGC_SHISS2.374e-2345.45Glucose-1-phosphate adenylyltransferase OS=Shigell... [more]
GLGC_SHIFL2.374e-2345.45Glucose-1-phosphate adenylyltransferase OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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