CF417165 | Citrus Genome Database

Overview


Name	CF417165
Unique Name	CF417165
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	690

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHIF8 (Glucose-1-phosphate adenylyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHIDS (Glucose-1-phosphate adenylyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHIBS (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHIB3 (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOUT (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=glgC PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOSM (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOSE (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain SE11) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLU (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLI (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain K12) GN=glgC PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECOLC (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

The following BLAST results are available for this feature:

BLAST of CF417165 vs. ExPASy Swiss-Prot

BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307


Match Name	E-value	Identity	Description
GLGC_SHIF8	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_SHIDS	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_SHIBS	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_SHIB3	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Shigell...	[more]
GLGC_ECOUT	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOSM	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOSE	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLU	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLI	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ECOLC	2.374e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC