CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECO55 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECO45 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECO24 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.374e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2 
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 2.374e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_DECAR (Glucose-1-phosphate adenylyltransferase OS=Dechloromonas aromatica (strain RCB) GN=glgC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.088e-23
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2 
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +R+   IIL GG GTRL  LT  R+KPAVP    +R++D  +SNC+NS I KI V TQ+ + SL RH+ R ++   G +  + F+++L AQQ  +   W+QGTADA
Sbjct:   28 TRNTFAIILAGGRGTRLKQLTDFRSKPAVPFAGKFRILDFTLSNCVNSGIRKIGVATQYKAHSLIRHIQRGWSFLDGRF--DEFIQLLPAQQQIDETQWYQGTADA 131

HSP 2 Score: 31.5722 bits (70), Expect = 3.088e-23
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L     +     LV+AGDH+Y+MDY R +
Sbjct:  132 VYQNLHFLRRYQPDHILVVAGDHIYKMDYGRML 164
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_MAGSA (Glucose-1-phosphate adenylyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.089e-23
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 2 
Query:  227 DSKNSQTCLDPEAS---RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            D     T +D E +   R  L +IL GG G+RL  LT   AKPA+P    +R++D  +SNC+NS I +I VLTQ+ + SL +H+ R +    G +    F+E+L AQQ  +  NW++GTADA
Sbjct:    3 DPTERGTAIDIEVNDRLRKTLALILAGGRGSRLMDLTDWHAKPAIPFAGKFRIVDFTLSNCINSGIRRIGVLTQYKAHSLLQHIQRGWGFLRGEFNE--FIELLPAQQRTQGENWYKGTADA 122

HSP 2 Score: 30.0314 bits (66), Expect = 3.089e-23
Identity = 14/33 (42.42%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   H     LVLAGDH+Y+M Y + +
Sbjct:  123 VFQNLDIIHAHRPEHVLVLAGDHVYKMHYGKML 155
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ESCF3 (Glucose-1-phosphate adenylyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.229e-23
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 2 
Query:  233 KNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    6 KNDPLMLARQLPIKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRIGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 5.229e-23
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3 
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATW (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATO (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATN (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143
[Close]
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATM (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2 
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3 
Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_ECO552.374e-2345.45Glucose-1-phosphate adenylyltransferase OS=Escheri... [more]
GLGC_ECO452.374e-2345.45Glucose-1-phosphate adenylyltransferase OS=Escheri... [more]
GLGC_ECO242.374e-2345.45Glucose-1-phosphate adenylyltransferase OS=Escheri... [more]
GLGC_DECAR3.088e-2346.23Glucose-1-phosphate adenylyltransferase OS=Dechlor... [more]
GLGC_MAGSA3.089e-2341.80Glucose-1-phosphate adenylyltransferase OS=Magneto... [more]
GLGC_ESCF35.229e-2346.15Glucose-1-phosphate adenylyltransferase OS=Escheri... [more]
GLGC_FRATW5.232e-2348.57Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATO5.232e-2348.57Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATN5.232e-2348.57Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_FRATM5.232e-2348.57Glucose-1-phosphate adenylyltransferase OS=Francis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
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