CF417165 | Citrus Genome Database

Overview


Name	CF417165
Unique Name	CF417165
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	690

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATH (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2

Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRATF (Glucose-1-phosphate adenylyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.232e-23
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 2

Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S SL RHL R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIIDFALSNCLNSGIRRIGVVTQYKSHSLLRHLQRGWGF-LRGELNE-FIDLLPAQQRVDEEHWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 5.232e-23
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ECO27 (Glucose-1-phosphate adenylyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.853e-23
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            VS  KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I ++ V+TQ+ S +L +H+ R + S      NE FV++L AQQ  +  NW++GTADA
Sbjct:    2 VSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPAVHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGW-SFFNEEMNE-FVDLLPAQQRMKGENWYRGTADA 120

HSP 2 Score: 28.4906 bits (62), Expect = 8.853e-23
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY   +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSHML 153

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ENT38 (Glucose-1-phosphate adenylyltransferase OS=Enterobacter sp. (strain 638) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.152e-22
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 2

Query:  233 KNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ     NW++GTADA
Sbjct:    6 KNDPLMLARQLPLKTVALILAGGRGTRLKDLTIKRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFFSEEMNE-FVDLLPAQQRVHGENWYRGTADA 120

HSP 2 Score: 28.8758 bits (63), Expect = 1.152e-22
Identity = 11/33 (33.33%), Postives = 18/33 (54.55%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY   +
Sbjct:  121 VTQNLDIIRRYGAEYIVILAGDHIYKQDYSHML 153

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_FRAP2 (Glucose-1-phosphate adenylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.152e-22
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 2

Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +  + ++L GG G+RLY LT  RAKPAV  G  +R++D  +SNCLNS I +I V+TQ+ S SL RH+ R +   + G  NE F+++L AQQ  +  +W++GTADA
Sbjct:   12 KKAMALVLAGGRGSRLYNLTDTRAKPAVYFGGKFRIVDFALSNCLNSGIRRIGVVTQYKSHSLLRHIQRGWGF-LRGELNE-FIDLLPAQQRVDEESWYRGTADA 114

HSP 2 Score: 28.8758 bits (63), Expect = 1.152e-22
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 3

Query:  633 LVLAGDHLYRMDY 671
            +VLAGDH+Y+MDY
Sbjct:  131 IVLAGDHIYKMDY 143

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.153e-22
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 2

Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            +R    +IL GG G+RLY LT  RAKPA+  G  YR+ID P+SNC+NS I ++ V+TQ+ S SL RH++R +    G +K E    VE+L A Q     NW+QGTADA
Sbjct:   11 TRDTYALILAGGRGSRLYELTDWRAKPALYFGGKYRIIDFPLSNCINSGIRRVGVVTQYKSHSLIRHVTRGW----GHFKKELGESVEILPASQQTSG-NWYQGTADA 113

HSP 2 Score: 29.261 bits (64), Expect = 1.153e-22
Identity = 10/19 (52.63%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  633 LVLAGDHLYRMDYERFIQA 689
            ++L+GDH+YRMDY   + A
Sbjct:  130 MILSGDHIYRMDYAGLLAA 148

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_KLEP7 (Glucose-1-phosphate adenylyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.499e-22
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 2

Query:  233 KNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ     NW++GTADA
Sbjct:    6 KNDPLMLARQLPIKSVALILAGGRGTRLKDLTIKRAKPAVHFGGKFRIIDFALSNCINSGIRRIGVITQYQSHTLVQHIQRGW-SFFSEEMNE-FVDLLPAQQRVHGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 1.499e-22
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIISRYKAEYVVILAGDHIYKQDYSRML 153

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_KLEP3 (Glucose-1-phosphate adenylyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glgC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.499e-22
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 2

Query:  233 KNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            KN    L  +     + +IL GG GTRL  LT KRAKPAV  G  +R+ID  +SNC+NS I +I V+TQ+ S +L +H+ R + S      NE FV++L AQQ     NW++GTADA
Sbjct:    6 KNDPLMLARQLPIKSVALILAGGRGTRLKDLTIKRAKPAVHFGGKFRIIDFALSNCINSGIRRIGVITQYQSHTLVQHIQRGW-SFFSEEMNE-FVDLLPAQQRVHGENWYRGTADA 120

HSP 2 Score: 30.4166 bits (67), Expect = 1.499e-22
Identity = 12/33 (36.36%), Postives = 19/33 (57.58%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+ DY R +
Sbjct:  121 VTQNLDIIRRYKAEYVVILAGDHIYKQDYSRML 153

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.499e-22
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 2

Query:  251 LDPEA------SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            LDP +      +R  + ++L GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I +I +LTQ+ + SL RH+ R ++S    +K E   +VE+L A Q   +PNW+QGTADA
Sbjct:    2 LDPNSRYVSRLTRDTVALVLAGGRGSRLHELTDWRAKPALHFGGKFRIIDFPLSNCVNSGIRRIGILTQYKAHSLIRHVIRGWSS----FKKEFGEYVEILPASQR-YSPNWYQGTADA 115

HSP 2 Score: 28.1054 bits (61), Expect = 1.499e-22
Identity = 11/17 (64.71%), Postives = 14/17 (82.35%), Query Frame = 3

Query:  633 LVLAGDHLYRMDYERFI 683
            LVL+GDH+Y+MDY   I
Sbjct:  132 LVLSGDHVYQMDYGAII 148

[Close]

BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.499e-22
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 2

Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            V++ K+    L  +     + +IL GG GTRL  LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ     +W++GTADA
Sbjct:    2 VNNDKHDPLMLARQLPLKSVALILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNAEMNE-FVDLLPAQQRYSTDHWYRGTADA 120

HSP 2 Score: 31.9574 bits (71), Expect = 1.499e-22
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3

Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+MDY R +
Sbjct:  121 VCQNLDIIRRYRAEYMVILAGDHIYKMDYSRML 153

The following BLAST results are available for this feature:

BLAST of CF417165 vs. ExPASy Swiss-Prot

BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307


Match Name	E-value	Identity	Description
GLGC_FRATH	5.232e-23	48.57	Glucose-1-phosphate adenylyltransferase OS=Francis...	[more]
GLGC_FRATF	5.232e-23	48.57	Glucose-1-phosphate adenylyltransferase OS=Francis...	[more]
GLGC_ECO27	8.853e-23	45.45	Glucose-1-phosphate adenylyltransferase OS=Escheri...	[more]
GLGC_ENT38	1.152e-22	47.01	Glucose-1-phosphate adenylyltransferase OS=Enterob...	[more]
GLGC_FRAP2	1.152e-22	46.67	Glucose-1-phosphate adenylyltransferase OS=Francis...	[more]
GLGC_SHEFN	1.153e-22	49.07	Glucose-1-phosphate adenylyltransferase OS=Shewane...	[more]
GLGC_KLEP7	1.499e-22	46.15	Glucose-1-phosphate adenylyltransferase OS=Klebsie...	[more]
GLGC_KLEP3	1.499e-22	46.15	Glucose-1-phosphate adenylyltransferase OS=Klebsie...	[more]
GLGC_SACD2	1.499e-22	45.38	Glucose-1-phosphate adenylyltransferase OS=Sacchar...	[more]
GLGC_ERWCT	1.499e-22	43.80	Glucose-1-phosphate adenylyltransferase OS=Erwinia...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC