CF417165

Overview
NameCF417165
Unique NameCF417165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.950e-22
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = 2
Query:  221 VSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            V++ K+    L  +     + +IL GG GTRL  LT  RAKPAV  G  +R+ID  +SNCLNS I +I V+TQ+ S +L +H+ R + S +    NE FV++L AQQ     +W++GTADA
Sbjct:    2 VNNDKHDPLMLARQLPLKSVALILAGGRGTRLKGLTALRAKPAVHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGW-SFLNAEMNE-FVDLLPAQQRNATDHWYRGTADA 120          

HSP 2 Score: 31.5722 bits (70), Expect = 1.950e-22
Identity = 13/33 (39.39%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L +   +     ++LAGDH+Y+MDY R +
Sbjct:  121 VCQNLDIIRRYRAEYVVILAGDHIYKMDYSRML 153          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHORU (Glucose-1-phosphate adenylyltransferase OS=Rhodospirillum rubrum GN=glgC PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.951e-22
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  263 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            A +  L ++L GG G+RL  LT + +KPAVP G  YR+ID P+SNC+NS I ++ V+TQ+ + +L  H+ R +    G  + E   FVE+  AQQ  +  +W+ GTADA
Sbjct:   14 ALKETLALVLAGGRGSRLRDLTNRESKPAVPFGGKYRIIDFPLSNCMNSGIRRMCVITQYRAHTLIHHIQRGW----GFLRAEIGEFVELWPAQQQTDKESWYLGTADA 118          

HSP 2 Score: 32.7278 bits (73), Expect = 1.951e-22
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L L   H+    L+LAGDH+Y+ DY + +
Sbjct:  119 VHQNLDLIRMHDPRFVLILAGDHIYKQDYSKLL 151          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHORT (Glucose-1-phosphate adenylyltransferase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=glgC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.951e-22
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 2
Query:  263 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            A +  L ++L GG G+RL  LT + +KPAVP G  YR+ID P+SNC+NS I ++ V+TQ+ + +L  H+ R +    G  + E   FVE+  AQQ  +  +W+ GTADA
Sbjct:   14 ALKETLALVLAGGRGSRLRDLTNRESKPAVPFGGKYRIIDFPLSNCMNSGIRRMCVITQYRAHTLIHHIQRGW----GFLRAEIGEFVELWPAQQQTDKESWYLGTADA 118          

HSP 2 Score: 32.7278 bits (73), Expect = 1.951e-22
Identity = 14/33 (42.42%), Postives = 20/33 (60.61%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFI 683
            V Q L L   H+    L+LAGDH+Y+ DY + +
Sbjct:  119 VHQNLDLIRMHDPRFVLILAGDHIYKQDYSKLL 151          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_METFK (Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.538e-22
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 2
Query:  266 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +++ + +IL GG G+RL  LT   AKPAVP G  +R+ID P+SNC+NS + +I V+TQ+ + +L +H+ R +    G +    FVE+L AQQ  +   W++GTADA
Sbjct:   16 TKNTVALILAGGKGSRLRDLTNWTAKPAVPFGGKFRIIDFPLSNCINSGVRRIGVVTQYKAHTLIQHIQRGWGFLRGEFNE--FVELLPAQQRIQE-EWYKGTADA 118          

HSP 2 Score: 33.4982 bits (75), Expect = 2.538e-22
Identity = 15/35 (42.86%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            V Q L +  + N+   L+LAGDH+Y+MDY + + A
Sbjct:  119 VFQNLDILRQTNIEFVLILAGDHVYKMDYGQMLAA 153          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_RHOFD (Glucose-1-phosphate adenylyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.302e-22
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            R  + ++L GG G+RL  LT+  AKPAV  G  +R+ID  +SNC+NS + +I VLTQ+ S SL RHL   + S +    NE F+++L AQQ  +  +W++GTADA
Sbjct:   11 RRTISLVLAGGRGSRLQDLTENCAKPAVHFGGKFRIIDFVLSNCVNSGLHRIGVLTQYKSHSLLRHLQHGW-SFLRNEVNE-FIDLLPAQQRVDEASWYRGTADA 113          

HSP 2 Score: 33.8834 bits (76), Expect = 3.302e-22
Identity = 15/34 (44.12%), Postives = 22/34 (64.71%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            V Q + +  EH+    LVLAGDH+Y+M+Y   I+
Sbjct:  114 VYQNIDILREHDPKYILVLAGDHVYKMNYASLIE 147          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_TERTT (Glucose-1-phosphate adenylyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.303e-22
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 2
Query:  251 LDPEA------SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNE--GFVEVLAAQQSPENPNWFQGTADA 583
            LDP +      +R  + +IL GG G+RL+ LT  RAKPA+  G  +R+ID P+SNC+NS I ++ VLTQ+ + SL RHL R ++     +K E   +VE+L A Q   +PNW+QGTADA
Sbjct:    2 LDPNSRYVSRLTRDTMALILAGGRGSRLHELTDWRAKPALHFGGKFRIIDFPLSNCVNSGIRRVGVLTQYKAHSLIRHLVRGWSH----FKKELGEYVEILPASQR-YSPNWYQGTADA 115          

HSP 2 Score: 26.9498 bits (58), Expect = 3.303e-22
Identity = 9/13 (69.23%), Postives = 13/13 (100.00%), Query Frame = 3
Query:  633 LVLAGDHLYRMDY 671
            +VL+GDH+Y+MDY
Sbjct:  132 MVLSGDHVYQMDY 144          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC_LACLM (Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=glgC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.305e-22
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  275 VLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            +LG+IL GG GTRL  LTK  AKPAVP G  YR+ID  +SNC NSN+  + V+TQ+   +LN H+       + G  N G V +L    S E   WF+GT+ A
Sbjct:    5 MLGLILAGGQGTRLGKLTKDVAKPAVPFGGRYRIIDFALSNCANSNVKNVGVITQYQPLTLNAHIGNGAPWGLNGI-NRG-VTILQPYFSQEGSKWFEGTSHA 105          

HSP 2 Score: 33.4982 bits (75), Expect = 4.305e-22
Identity = 13/35 (37.14%), Postives = 23/35 (65.71%), Query Frame = 3
Query:  585 VRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQA 689
            V Q +   ++ N    L+L+GDH+Y+MDYE  +++
Sbjct:  106 VYQNISYIDQQNPEYVLILSGDHIYKMDYEAMLES 140          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBPA (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio parahaemolyticus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.594e-22
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAA--QQSPENPNWFQGTADA 583
            +  L +IL GG G+RL PLT  RAKPAVP G  YR+ID  ++NCLNS + KI VLTQ+ S SL +HL   ++       N    E + A   Q  +   W++GTADA
Sbjct:    2 QDALAVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLNSGLRKILVLTQYKSHSLQKHLRDGWS-----IFNPELGEYITAVPPQMRKGGAWYEGTADA 103          

HSP 2 Score: 35.4242 bits (80), Expect = 5.594e-22
Identity = 13/30 (43.33%), Postives = 20/30 (66.67%), Query Frame = 3
Query:  597 LWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            LWL   ++    +VL+GDH+YRMDY   ++
Sbjct:  108 LWLLSRNDAKYVVVLSGDHIYRMDYAAMLE 137          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBVY (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio vulnificus (strain YJ016) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.594e-22
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +L +IL GG G+RL PLT  RAKPAVP G  YR+ID  ++NCL+S + KI VLTQ+ S SL +HL   ++     +G Y            Q  +   W++GTADA
Sbjct:    2 QDILTVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRKILVLTQYKSHSLQKHLRDGWSIFNPELGEYITS------VPPQMRKGGKWYEGTADA 103          

HSP 2 Score: 36.1946 bits (82), Expect = 5.594e-22
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  597 LWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            LWL E       +VL+GDH+YRMDY   ++
Sbjct:  108 LWLLERSEAKYVMVLSGDHIYRMDYAPMLE 137          
BLAST of CF417165 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBVU (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio vulnificus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.594e-22
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  269 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYA---SNMGGYKNEGFVEVLAAQQSPENPNWFQGTADA 583
            + +L +IL GG G+RL PLT  RAKPAVP G  YR+ID  ++NCL+S + KI VLTQ+ S SL +HL   ++     +G Y            Q  +   W++GTADA
Sbjct:    2 QDILTVILAGGMGSRLSPLTDDRAKPAVPFGGKYRIIDFTLTNCLHSGLRKILVLTQYKSHSLQKHLRDGWSIFNPELGEYITS------VPPQMRKGGKWYEGTADA 103          

HSP 2 Score: 36.1946 bits (82), Expect = 5.594e-22
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 3
Query:  597 LWLFEEHNVLEFLVLAGDHLYRMDYERFIQ 686
            LWL E       +VL+GDH+YRMDY   ++
Sbjct:  108 LWLLERSEAKYVMVLSGDHIYRMDYAPMLE 137          
The following BLAST results are available for this feature:
BLAST of CF417165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
GLGC_PECCP1.950e-2243.80Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_RHORU1.951e-2243.12Glucose-1-phosphate adenylyltransferase OS=Rhodosp... [more]
GLGC_RHORT1.951e-2243.12Glucose-1-phosphate adenylyltransferase OS=Rhodosp... [more]
GLGC_METFK2.538e-2243.40Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_RHOFD3.302e-2245.71Glucose-1-phosphate adenylyltransferase OS=Rhodofe... [more]
GLGC_TERTT3.303e-2246.22Glucose-1-phosphate adenylyltransferase OS=Teredin... [more]
GLGC_LACLM4.305e-2246.60Glucose-1-phosphate adenylyltransferase OS=Lactoco... [more]
GLGC2_VIBPA5.594e-2245.79Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC2_VIBVY5.594e-2243.52Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC2_VIBVU5.594e-2243.52Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-095 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B8 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417165 ID=CF417165; Name=CF417165; organism=Citrus sinensis; type=EST; length=690bp
TTAACAGATGGCGAGTATGGCGTCGATTGGATCGCTCAAAGTTCCGTCAT
CTCCGTCAACCGCAACAACGTCGTCTAACTCCAACAATCACAGCCGCAGG
AGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGACAA
GATTTTTTCTAAAGCTGTCACTGGTGATCGGCGAAGCGAGAGGCGTCCGA
TCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTTGC
CTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGTGG
AGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGCTG
TTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATTGT
TTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCTGC
GTCCCTCAATCGTCACCTGTCGAGGGCGTATGCTAGCAACATGGGTGGTT
ACAAGAATGAAGGATTTGTTGAAGTTCTTGCAGCACAGCAGAGTCCAGAG
AATCCCAATTGGTTTCAGGGTACAGCTGATGCNTGTGAGGCAGTATTTGT
GGCTCTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGAT
CATTTGTACCGAATGGACTACGAGAGATTTATTCAGGCAC
back to top