CF417169

Overview
NameCF417169
Unique NameCF417169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417169_ssr1 microsatellite CF417169_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:126..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.736e-16
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 110
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.204e-16
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G
Sbjct:   72 TGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLG 149

HSP 2 Score: 21.557 bits (44), Expect = 2.204e-16
Identity = 11/24 (45.83%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  247 WYGPDRRIFLPEGLLDRSEIPEYL 318
            WYGPDR  +L        E P YL
Sbjct:   51 WYGPDRVKYLGP---FSGEAPSYL 71
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.267e-16
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 586
            TGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHA 154
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.866e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   69 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 146

HSP 2 Score: 21.557 bits (44), Expect = 2.866e-16
Identity = 11/24 (45.83%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  247 WYGPDRRIFLPEGLLDRSEIPEYL 318
            WYGPDR  +L        E P YL
Sbjct:   48 WYGPDRVKYLGP---FSGEAPSYL 68
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   42 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLG 119
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.960e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.724e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149

HSP 2 Score: 21.1718 bits (43), Expect = 3.724e-16
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   51 WYGPDRVKYL 60
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.724e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149

HSP 2 Score: 21.1718 bits (43), Expect = 3.724e-16
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   51 WYGPDRVKYL 60
[Close]
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.724e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149

HSP 2 Score: 21.1718 bits (43), Expect = 3.724e-16
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   51 WYGPDRVKYL 60
The following BLAST results are available for this feature:
BLAST of CF417169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB21_PEA1.736e-1650.00Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_PETSP2.204e-1651.90Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB24_SOLLC2.267e-1649.44Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_APIGR2.866e-1650.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP2.960e-1650.63Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC2.960e-1650.63Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_TOBAC2.960e-1650.63Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2G_SOLLC3.724e-1650.00Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_SPIOL3.724e-1650.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC3.724e-1650.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-099 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417169 ID=CF417169; Name=CF417169; organism=Citrus sinensis; type=EST; length=604bp
AGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCAC
TCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATG
TCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACT
TTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAA
GTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGT
ATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCT
GAGATCCCTGAGTACTTGGACCGGAGAAGTTCCCGGAGACTATGGTTACG
ATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCA
TATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCAT
CATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTG
TCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTAC
TTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGAT
TGTT
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