CF417169
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.293e-16 Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2 Query: 305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 S S TGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L Y G Sbjct: 64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLG 146 HSP 2 Score: 21.1718 bits (43), Expect = 6.293e-16 Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 Query: 247 WYGPDRRIFL 276 WYGPDR +L Sbjct: 48 WYGPDRVKYL 57
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2 Query: 305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 S S TGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16 Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2 Query: 305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 S S TGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 8.177e-16 Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 TGE PGDYG+D GLS P F+K + E+IH RW MLGA G + PE F + G G EAVWFK G+ + L+Y G Sbjct: 71 TGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLG 148 HSP 2 Score: 21.557 bits (44), Expect = 8.177e-16 Identity = 11/24 (45.83%), Postives = 12/24 (50.00%), Query Frame = 1 Query: 247 WYGPDRRIFLPEGLLDRSEIPEYL 318 WYGPDR +L E P YL Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYL 70
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16 Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2 Query: 305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 S S TGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 604 TGE PGDYG+D GLS P+ F +Y+ ELIHAR +LGA G + PE ++ G G A+WFK GA + LNY G I N+V + ++V Sbjct: 77 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVV 175
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15 Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 TGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G G EAVWFK G+ + L+Y G Sbjct: 11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 88
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15 Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 +GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVWFK G+ + L+Y G Sbjct: 70 SGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLG 147
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15 Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 TGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G Sbjct: 70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.795e-15 Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2 Query: 320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556 TGE PGDYG+D +S P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK GA + L+Y G Sbjct: 71 TGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAG 148 HSP 2 Score: 21.557 bits (44), Expect = 1.795e-15 Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1 Query: 247 WYGPDRRIFL 276 WYGPDR +L Sbjct: 50 WYGPDRPKYL 59 The following BLAST results are available for this feature:
BLAST of CF417169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417169 ID=CF417169; Name=CF417169; organism=Citrus sinensis; type=EST; length=604bpback to top |