CF417169

Overview
NameCF417169
Unique NameCF417169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417169_ssr1 microsatellite CF417169_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:126..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.293e-16
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L Y G
Sbjct:   64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLG 146          

HSP 2 Score: 21.1718 bits (43), Expect = 6.293e-16
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   48 WYGPDRVKYL 57          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.595e-16
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLG 148          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.177e-16
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P  F+K +  E+IH RW MLGA G + PE F + G   G EAVWFK G+ +     L+Y G
Sbjct:   71 TGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLG 148          

HSP 2 Score: 21.557 bits (44), Expect = 8.177e-16
Identity = 11/24 (45.83%), Postives = 12/24 (50.00%), Query Frame = 1
Query:  247 WYGPDRRIFLPEGLLDRSEIPEYL 318
            WYGPDR  +L        E P YL
Sbjct:   50 WYGPDRVKYLGP---FSGEAPSYL 70          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = 2
Query:  305 SLSTWTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            S S  TGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIV 604
            TGE PGDYG+D  GLS  P+ F +Y+  ELIHAR  +LGA G + PE   ++ G   G  A+WFK GA +     LNY G    I   N+V  +  ++V
Sbjct:   77 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVV 175          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.125e-15
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F+K +  E+IH+ WAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 88          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            +GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G
Sbjct:   70 SGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLG 147          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   70 TGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147          
BLAST of CF417169 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.795e-15
Identity = 40/79 (50.63%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  320 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 556
            TGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G
Sbjct:   71 TGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAG 148          

HSP 2 Score: 21.557 bits (44), Expect = 1.795e-15
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  247 WYGPDRRIFL 276
            WYGPDR  +L
Sbjct:   50 WYGPDRPKYL 59          
The following BLAST results are available for this feature:
BLAST of CF417169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB22_HORVU6.293e-1650.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ARATH6.595e-1648.81Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH6.595e-1648.81Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_PETSP8.177e-1650.63Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_NICPL8.613e-1650.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2_DUNSA1.125e-1543.43Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.125e-1549.37Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_POLMU1.469e-1550.63Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_SINAL1.469e-1549.37Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PINTH1.795e-1550.63Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-099 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417169 ID=CF417169; Name=CF417169; organism=Citrus sinensis; type=EST; length=604bp
AGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCAC
TCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATG
TCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACT
TTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAA
GTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGT
ATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCT
GAGATCCCTGAGTACTTGGACCGGAGAAGTTCCCGGAGACTATGGTTACG
ATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCA
TATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCAT
CATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAGCTG
TCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAACTAC
TTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGAGAT
TGTT
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