CF417199

Overview
NameCF417199
Unique NameCF417199
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK4_HUMAN (Cell division protein kinase 4 OS=Homo sapiens GN=CDK4 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 6.052e-26
Identity = 67/202 (33.17%), Postives = 102/202 (50.50%), Query Frame = 3
Query:   12 KYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEM---DEEGIPPTALREVSLLQMLS--QSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKS-NLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            +YE + ++G G YG VYKA+D  +G  VALK  R+        G+P + +REV+LL+ L   +   VVRL+ V                    ATS   +   + LVFE++D DL+ ++D   K P P  LP   I+  + Q  +G+   H++ ++HRDLKP+N               GL R ++  + + T  +VTLWYR
Sbjct:    5 RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDV-------------------CATSRTDREIKVTLVFEHVDQDLRTYLD---KAP-PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPEN-ILVTSGGTVKLADFGLARIYSYQM-ALTPVVVTLWYR 181          

HSP 2 Score: 48.9062 bits (115), Expect = 6.052e-26
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  601 APEVLLGSTHYSTAVDMWSVGCIFAEMVKRQ 693
            APEVLL ST Y+T VDMWSVGCIFAEM +R+
Sbjct:  182 APEVLLQST-YATPVDMWSVGCIFAEMFRRK 211          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK7_CARAU (Cell division protein kinase 7 OS=Carassius auratus GN=cdk7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 7.857e-26
Identity = 68/202 (33.66%), Postives = 100/202 (49.50%), Query Frame = 3
Query:    3 RMEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRL---EMDEEGIPPTALREVSLLQMLSQSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            R + YEKL+ +GEG +  VYKA+DK T  +VA+KK ++      ++GI  TALRE+ LLQ LS    +  L    H                        KSN+ L+  +++TDL+  I           L P  I++++    +G+ + H+H +LHRDLKP N               GL +AF  P + YTH++VT WYR
Sbjct:    8 RAKLYEKLDFLGEGQFATVYKARDKTTNTIVAIKKIKVGHRTEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH------------------------KSNISLLC-FMETDLEVIIKD-----TSLVLTPANIKAYILMSLQGLEYMHNHWILHRDLKPNN-LLLDENGVLKLADFGLAKAFGSPNRVYTHQVVTRWYR 178          

HSP 2 Score: 38.1206 bits (87), Expect = 7.857e-26
Identity = 16/30 (53.33%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  601 APEVLLGSTHYSTAVDMWSVGCIFAEMVKR 690
            APE+L G+  Y   VDMW+VG I AE++ R
Sbjct:  179 APELLFGARMYGVGVDMWAVGSILAELLLR 208          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDKL4_HUMAN (Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=CDKL4 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.871e-26
Identity = 63/198 (31.82%), Postives = 94/198 (47.47%), Query Frame = 3
Query:    6 MEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLSQSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            MEKYEKL K GEG+YG V+K ++K +GQ+VA+KK     D+  +   ALRE+ +L+ L     +V L+ V                          K  ++LVFEY D  L   ++      NP  +   +I+S L+Q  + +  CH H  +HRD+KP+N               G  +   +P  +YT  + T WYR
Sbjct:    1 MEKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQLKHP-NLVNLIEV-----------------------FRRKRKMHLVFEYCDHTLLNELER-----NPNGVADGVIKSVLWQTLQALNFCHIHNCIHRDIKPEN-ILITKQGIIKICDFGFAQ-ILIPGDAYTDYVATRWYR 167          

HSP 2 Score: 45.4394 bits (106), Expect = 7.871e-26
Identity = 16/31 (51.61%), Postives = 26/31 (83.87%), Query Frame = 1
Query:  601 APEVLLGSTHYSTAVDMWSVGCIFAEMVKRQ 693
            APE+L+G T Y ++VD+W++GC+FAE++  Q
Sbjct:  168 APELLVGDTQYGSSVDIWAIGCVFAELLTGQ 198          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK4_PIG (Cell division protein kinase 4 OS=Sus scrofa GN=CDK4 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.025e-25
Identity = 64/201 (31.84%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   12 KYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMD---EEGIPPTALREVSLLQMLS--QSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            +YE + ++G G YG VYKA+D  +G  VALK  R+        G+P + +REV+LL+ L   +   VVRL+ V                        + ++ + LVFE++D DL+ ++D   K P P  LP   I+  + Q  +G+   H++ ++HRDLKP+N               GL R ++  + + T  +VTLWYR
Sbjct:    5 RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGAGGGLPISTVREVALLRRLEAFEHPNVVRLMDV------------------CATARTDRETKVTLVFEHVDQDLRTYLD---KAP-PPGLPVETIKDLMRQFLRGLDFLHANCIVHRDLKPEN-ILVTSGGTVKLADFGLARIYSYQM-ALTPVVVTLWYR 181          

HSP 2 Score: 48.9062 bits (115), Expect = 1.025e-25
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  601 APEVLLGSTHYSTAVDMWSVGCIFAEMVKRQ 693
            APEVLL ST Y+T VDMWSVGCIFAEM +R+
Sbjct:  182 APEVLLQST-YATPVDMWSVGCIFAEMFRRK 211          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK4_BOVIN (Cell division protein kinase 4 OS=Bos taurus GN=CDK4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.025e-25
Identity = 64/201 (31.84%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   12 KYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMD---EEGIPPTALREVSLLQMLS--QSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            +YE + ++G G YG VYKA+D  +G  VALK  R+        G+P + +REV+LL+ L   +   VVRL+ V                        + ++ + LVFE++D DL+ ++D   K P P  LP   I+  + Q  +G+   H++ ++HRDLKP+N               GL R ++  + + T  +VTLWYR
Sbjct:    5 RYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGAGGGLPISTVREVALLRRLEAFEHPNVVRLMDV------------------CATARTDRETKVTLVFEHVDQDLRTYLD---KAP-PPGLPVETIKDLMRQFLRGLDFLHANCIVHRDLKPEN-ILVTSGGTVKLADFGLARIYSYQM-ALTPVVVTLWYR 181          

HSP 2 Score: 48.9062 bits (115), Expect = 1.025e-25
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1
Query:  601 APEVLLGSTHYSTAVDMWSVGCIFAEMVKRQ 693
            APEVLL ST Y+T VDMWSVGCIFAEM +R+
Sbjct:  182 APEVLLQST-YATPVDMWSVGCIFAEMFRRK 211          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 RMEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRL---EMDEEGIPPTALREVSLLQMLSQSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            R ++YEKL+ +GEG +  VYKA+DK T Q+VA+KK +L      ++GI  TALRE+ LLQ LS    +  L    H                        KSN+ LVF++++TDL+  I       N   L P+ I++++    +G+ + H H +LHRDLKP N               GL ++F  P ++YTH++VT WYR
Sbjct:    8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH------------------------KSNISLVFDFMETDLEVIIKD-----NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNN-LLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYR 179          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.559e-25
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 3
Query:    3 RMEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRL---EMDEEGIPPTALREVSLLQMLSQSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            R ++YEKL+ +GEG +  VYKA+DK T Q+VA+KK +L      ++GI  TALRE+ LLQ LS    +  L    H                        KSN+ LVF++++TDL+  I       N   L P+ I++++    +G+ + H H +LHRDLKP N               GL ++F  P ++YTH++VT WYR
Sbjct:    8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH------------------------KSNISLVFDFMETDLEVIIKD-----NSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNN-LLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYR 179          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK15_HUMAN (Cell division protein kinase 15 OS=Homo sapiens GN=CDK15 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.036e-25
Identity = 75/195 (38.46%), Postives = 102/195 (52.31%), Query Frame = 3
Query:   15 YEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLSQSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAFTVPLKSYTHEIVTLWYR 599
            Y  LEK+GEG+Y  VYK   +  GQLVALK   +   EEG+P TA+RE SLL+ L  +  +V L  + H                        K  L  VFEY+ TDL +++  H     P  L P  ++ F++QL +G+A+ H   VLHRDLKPQN               GL RA ++P ++Y+ E+VTLWYR
Sbjct:   52 YLNLEKLGEGSYATVYKGISRINGQLVALKVISMNA-EEGVPFTAIREASLLKGLKHA-NIVLLHDIIHT-----------------------KETLTFVFEYMHTDLAQYMSQH-----PGGLHPHNVRLFMFQLLRGLAYIHHQHVLHRDLKPQN-LLISHLGELKLADFGLARAKSIPSQTYSSEVVTLWYR 215          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK13_MOUSE (Cell division protein kinase 13 OS=Mus musculus GN=Cdk13 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 70/200 (35.00%), Postives = 110/200 (55.00%), Query Frame = 3
Query:    6 MEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLS-QSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAF-TVPLKSYTHEIVTLWYR 599
            ++K++ +  +GEGTYG+VYKA+DK TG++VALKK RL+ ++EG P TA+RE+ +L+ L+ QS+  ++ +  +  D+                     K   YLVFEY+D DL   ++S     N        I+SF+ QL +G+ +CH    LHRD+K  N               GL R + +   + YT++++TLWYR
Sbjct:  702 VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDA---------------LDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENH-----IKSFMRQLMEGLDYCHKKNFLHRDIKCSN-ILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYR 880          
BLAST of CF417199 vs. ExPASy Swiss-Prot
Match: CDK13_HUMAN (Cell division protein kinase 13 OS=Homo sapiens GN=CDK13 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.473e-25
Identity = 70/200 (35.00%), Postives = 110/200 (55.00%), Query Frame = 3
Query:    6 MEKYEKLEKVGEGTYGKVYKAKDKATGQLVALKKTRLEMDEEGIPPTALREVSLLQMLS-QSLYVVRLLCVEHVDSSLKSNNPSPDSASAFATSNNGKSNLYLVFEYLDTDLKKFIDSHRKGPNPRPLPPTLIQSFLYQLCKGVAHCHSHGVLHRDLKPQNXXXXXXXXXXXXXXXGLGRAF-TVPLKSYTHEIVTLWYR 599
            ++K++ +  +GEGTYG+VYKA+DK TG++VALKK RL+ ++EG P TA+RE+ +L+ L+ QS+  ++ +  +  D+                     K   YLVFEY+D DL   ++S     N        I+SF+ QL +G+ +CH    LHRD+K  N               GL R + +   + YT++++TLWYR
Sbjct:  702 VDKFDIIGIIGEGTYGQVYKARDKDTGEMVALKKVRLDNEKEGFPITAIREIKILRQLTHQSIINMKEIVTDKEDA---------------LDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFNENH-----IKSFMRQLMEGLDYCHKKNFLHRDIKCSN-ILLNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYR 880          
The following BLAST results are available for this feature:
BLAST of CF417199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
CDK4_HUMAN6.052e-2633.17Cell division protein kinase 4 OS=Homo sapiens GN=... [more]
CDK7_CARAU7.857e-2633.66Cell division protein kinase 7 OS=Carassius auratu... [more]
CDKL4_HUMAN7.871e-2631.82Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=... [more]
CDK4_PIG1.025e-2531.84Cell division protein kinase 4 OS=Sus scrofa GN=CD... [more]
CDK4_BOVIN1.025e-2531.84Cell division protein kinase 4 OS=Bos taurus GN=CD... [more]
CDK7_MOUSE1.559e-2535.64Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN1.559e-2535.64Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK15_HUMAN2.036e-2538.46Cell division protein kinase 15 OS=Homo sapiens GN... [more]
CDK13_MOUSE3.473e-2535.00Cell division protein kinase 13 OS=Mus musculus GN... [more]
CDK13_HUMAN3.473e-2535.00Cell division protein kinase 13 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-129 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417199 ID=CF417199; Name=CF417199; organism=Citrus sinensis; type=EST; length=697bp
AGAGGATGGAGAAGTACGAGAAGCTAGAGAAGGTGGGAGAAGGAACGTAC
GGGAAAGTGTACAAGGCAAAGGACAAAGCGACCGGGCAGTTGGTTGCTCT
GAAGAAAACAAGACTCGAAATGGATGAAGAAGGCATCCCCCCGACCGCTC
TCCGCGAAGTGTCCCTCCTCCAGATGCTCTCTCAATCCCTTTACGTCGTC
CGCCTCCTCTGCGTCGAACACGTGGACTCCTCTCTCAAATCCAACAACCC
CAGCCCCGACTCCGCTTCCGCCTTCGCCACCTCCAACAACGGCAAGTCTA
ATCTCTATCTCGTGTTTGAATACCTCGACACCGATCTAAAGAAATTCATC
GACTCGCACCGCAAGGGCCCCAATCCGAGGCCGCTGCCCCCCACTCTCAT
TCAGAGCTTCTTGTACCAGCTTTGCAAAGGCGTCGCCCACTGCCACAGCC
ACGGTGTCCTTCATCGCGACCTGAAGCCGCAGAATCTTCTCCTTGATAAG
GACAAGGGGATTCTCAAGATCGCCGATCTTGGCCTCGGACGCGCCTTCAC
CGTTCCTCTCAAAAGCTATACCCACGAGATTGTTACTCTCTGGTATAGGG
GCTCCCGAGGTGCTTCTTGGTTCCACTCATTACTCCACTGCTGTCGACAT
GTGGTCCGTTGGTTGCATTTTCGCTGAGATGGTTAAAAGGCAGGTTT
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