CF417210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 5.285e-46 Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 2 Query: 47 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 K KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK LPP WKYES+TAS LVA Sbjct: 2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 114
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.078e-42 Identity = 87/128 (67.97%), Postives = 100/128 (78.12%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 +W K ++ +V + +CK AK+G TPS+IG LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K L P WKYES ASTLVA Sbjct: 24 AWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA 151
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.493e-32 Identity = 66/84 (78.57%), Postives = 78/84 (92.86%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 253 +WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK Sbjct: 24 TWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32 Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358 W+K+ ++VE+ + +KG PS IGVILRD +GI VK+VTG +L+IL+ GLAPEIPEDL +L+K+A+ +RKHLE + KD SK L L+ES+IHRL +YYK+ LPP WKYE Sbjct: 23 WVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30 Identity = 63/127 (49.61%), Postives = 92/127 (72.44%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 +W++ ++++VE + K K+G + + IG ILRD +GI VK +TG KI +IL+ +GLAPEIPEDL LI++AV +RKHLE++ KDK S+ L L+ES+I RL +YY++T KLP W+Y+ A LV Sbjct: 24 AWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYDPEQAKLLV 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29 Identity = 63/129 (48.84%), Postives = 90/129 (69.77%), Query Frame = 2 Query: 5 WLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 WLK+ S D+E + + AKKG TPS IG+ILRD +G+ VK VTG K+++IL+ HG+ +PEDL L++KAV +R+HLE + KD +K L+ +ES+IHRL +YYK+ +LPP WKY A +V+ Sbjct: 23 WLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKYTPEQAKLIVS 151
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29 Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 358 SW++ S ++VE + AK+G P+ IG+ LRD +GI VK +TG KI IL+ HGLAPE+PEDL +LI++A +R+HL+R+ KD SK L L+ES+IHRL +YYK+ LP WKY+ Sbjct: 24 SWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29 Identity = 63/127 (49.61%), Postives = 89/127 (70.08%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 W++ + ++VE + + AKKG +PS IG+ILRD +GI VK +TG K+ +IL+ GLAP+IPEDL++LI+KA +R+HL + KDK +K L +ES+I RLA YYK+ KLP WKYE A L + Sbjct: 23 WVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYKRIGKLPKEWKYEPEKAELLAS 149
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29 Identity = 63/127 (49.61%), Postives = 87/127 (68.50%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 +W I++++ E+ I K AK+G + IG+ILRDS+GI VK VTG + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD SK L L ES+I RL +YY+ TK LP W+Y TA LV Sbjct: 24 AWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRYSPETARLLV 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29 Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 W++++ ++VE + + AK+G TPS IG+ILRD +GI VK + G K+ +IL+ GLAP+IPEDL++LI+KAV +R+H+ +DK +K L +ES+I RL RYYK KLP W Y+ A LVA Sbjct: 23 WVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYDPAKAELLVA 149 The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bpback to top |