CF417210

Overview
NameCF417210
Unique NameCF417210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W+ +S+++V+  I + AK G   + IG ILRD +GI  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  SK  L L+ES+I RL +YYK TK LP  W+Y   TA  LV
Sbjct:   25 WVSMSAEEVQAKIVEMAKDGNQSAIIGNILRDMYGIPNVKLVTGKSVSSIMKDAGFYSEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRYSPQTARLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W+  S +++E+ I KF K+G + S+IG+ILRD +GI  VK VTG +I +ILK +  A + PEDL +LIK+AV IR HL  N KD  SK  L ++ESRI RLA YY     LP  W+Y    A+ LV
Sbjct:    6 WVTYSDEEIEEMILKFNKEGKSTSEIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRYNPKEAALLV 131          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULAC (30S ribosomal protein S15P/S13e OS=Sulfolobus acidocaldarius GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W++ + ++VE  + + AK+G  PS IG++LRD +G+  VK +TG K+  IL+   + P+IPEDL++L+++AV IR+HL    KDK +K  L  VES+I RLA YYK+T KLP  W Y+   A  LV
Sbjct:   23 WVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLV 148          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_NITMS (30S ribosomal protein S15P/S13e OS=Nitrosopumilus maritimus (strain SCM1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 54/123 (43.90%), Postives = 85/123 (69.11%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 370
            SW+  S  ++E+ + K++K GLTPSQIG+ LRD H I  +K +T   I  IL+ + L  E+PEDL +++KKAV +++HL+ N+ D+ +   L L+E+++HRL+ YYKK  ++P  WKY+S  A
Sbjct:   24 SWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            W++   +++E+ I   A+KG  PS IG+ILRD  GI  VK + G  I  +L+  G+   +PEDL+ LI+KAV +R+HLE + KD  +K  L+ +ES+I RLA YYK+  KLP  WKY+   A  LVA
Sbjct:   24 WIQYDPEEIEEIIVDLARKGYGPSMIGIILRDQFGIPLVKPILGKSITEVLEERGIKMVVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_AERPE (30S ribosomal protein S15P/S13e OS=Aeropyrum pernix GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            WL  + +++E  I + AKKG  PS IG+ILRD +GI  VK + G  +  +L+  GL P +PEDL  LI+KAV +R+HL+ + KD  +K  LI +ES+I RL +YYK+   LPP WKY+   A  LV+
Sbjct:   23 WLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYGIPLVKPILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLESKIRRLVKYYKRRGVLPPDWKYDPEAAKLLVS 149          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W+ +S++D+E  I + AK G   + IG ILRD +G+  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   25 WVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26
Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 2
Query:    5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382
            W+ +S++D+E  I + AK G   + IG ILRD +G+  VK +TG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y   TA  LV
Sbjct:   25 WVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_CENSY (30S ribosomal protein S15P/S13e OS=Cenarchaeum symbiosum GN=rps15p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.561e-26
Identity = 54/123 (43.90%), Postives = 84/123 (68.29%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 370
            SW++    +VED I K+AK+GL PSQIG  LRD H I   + +TG  + +I++ HG  PE+PEDL ++++KAV +++HL  N+ D+ +   L L+E+++HRL  YYK+  ++P  WKY+S  A
Sbjct:   24 SWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145          
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 2
Query:    2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385
            +W  +S ++VE  + K   +  T SQ+G+ILRD +G+  +  VTG K+  ILK +G  P++PEDL +LIKKA+ + KHL+ N KD  +K  L L ES++ RL +YY  T  LP  W Y   TA  L++
Sbjct:   24 AWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151          
The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METVS1.224e-2647.6230S ribosomal protein S15P/S13e OS=Methanococcus v... [more]
RS15_METS31.224e-2649.2130S ribosomal protein S15P/S13e OS=Methanobrevibac... [more]
RS15_SULAC1.599e-2646.0330S ribosomal protein S15P/S13e OS=Sulfolobus acid... [more]
RS15_NITMS1.599e-2643.9030S ribosomal protein S15P/S13e OS=Nitrosopumilus ... [more]
RS15_HYPBU1.599e-2645.6730S ribosomal protein S15P/S13e OS=Hyperthermus bu... [more]
RS15_AERPE1.599e-2646.4630S ribosomal protein S15P/S13e OS=Aeropyrum perni... [more]
RS15_METM72.088e-2646.0330S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_METMP2.727e-2645.2430S ribosomal protein S15P/S13e OS=Methanococcus m... [more]
RS15_CENSY3.561e-2643.9030S ribosomal protein S15P/S13e OS=Cenarchaeum sym... [more]
RS15_UNCMA4.651e-2642.9730S ribosomal protein S15P/S13e OS=Uncultured meth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-140 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F9 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bp
AAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTAAGT
TTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGTGAC
TCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTTGCG
TATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGTACC
ACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAACAGG
AAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGATTCA
CAGGCTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCTGTCTGGA
AATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAAGAT
GCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTTAAG
GAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGACCTT
TATTCATAGTTTTTTTGGAAAGATTTAGTCCTTGGAGGAACAGAAATTTG
GAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTNCGAAATT
TTGTATTTTTGATGCACTTTATATTCGCTAAAAAAAAAAAAAA
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