CF417210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26 Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W+ +S+++V+ I + AK G + IG ILRD +GI VK VTG + I+K G E+PEDL++L+KKA+ +R HLE N +D SK L L+ES+I RL +YYK TK LP W+Y TA LV Sbjct: 25 WVSMSAEEVQAKIVEMAKDGNQSAIIGNILRDMYGIPNVKLVTGKSVSSIMKDAGFYSEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRYSPQTARLLV 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26 Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W+ S +++E+ I KF K+G + S+IG+ILRD +GI VK VTG +I +ILK + A + PEDL +LIK+AV IR HL N KD SK L ++ESRI RLA YY LP W+Y A+ LV Sbjct: 6 WVTYSDEEIEEMILKFNKEGKSTSEIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRYNPKEAALLV 131
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_SULAC (30S ribosomal protein S15P/S13e OS=Sulfolobus acidocaldarius GN=rps15p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26 Identity = 58/126 (46.03%), Postives = 85/126 (67.46%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W++ + ++VE + + AK+G PS IG++LRD +G+ VK +TG K+ IL+ + P+IPEDL++L+++AV IR+HL KDK +K L VES+I RLA YYK+T KLP W Y+ A LV Sbjct: 23 WVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYGVPLVKQITGRKLTAILQDRNMKPKIPEDLFNLMRRAVNIRRHLFEYPKDKSAKRGLEEVESKIRRLASYYKETGKLPQEWSYDPAKAELLV 148
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_NITMS (30S ribosomal protein S15P/S13e OS=Nitrosopumilus maritimus (strain SCM1) GN=rps15p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26 Identity = 54/123 (43.90%), Postives = 85/123 (69.11%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 370 SW+ S ++E+ + K++K GLTPSQIG+ LRD H I +K +T I IL+ + L E+PEDL +++KKAV +++HL+ N+ D+ + L L+E+++HRL+ YYKK ++P WKY+S A Sbjct: 24 SWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKSVVA 146
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_HYPBU (30S ribosomal protein S15P/S13e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps15p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26 Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 W++ +++E+ I A+KG PS IG+ILRD GI VK + G I +L+ G+ +PEDL+ LI+KAV +R+HLE + KD +K L+ +ES+I RLA YYK+ KLP WKY+ A LVA Sbjct: 24 WIQYDPEEIEEIIVDLARKGYGPSMIGIILRDQFGIPLVKPILGKSITEVLEERGIKMVVPEDLFRLIEKAVNLRRHLEEHPKDTHAKKGLLDLESKIRRLAEYYKRVGKLPRDWKYDPQQAKLLVA 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_AERPE (30S ribosomal protein S15P/S13e OS=Aeropyrum pernix GN=rps15p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.599e-26 Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 WL + +++E I + AKKG PS IG+ILRD +GI VK + G + +L+ GL P +PEDL LI+KAV +R+HL+ + KD +K LI +ES+I RL +YYK+ LPP WKY+ A LV+ Sbjct: 23 WLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYGIPLVKPILGKGVSEVLREKGLHPPLPEDLLMLIRKAVNLRRHLDEHPKDYHAKKGLIDLESKIRRLVKYYKRRGVLPPDWKYDPEAAKLLVS 149
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.088e-26 Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W+ +S++D+E I + AK G + IG ILRD +G+ VK VTG + I+K G E+PEDL++L+KKA+ +R HLE N +D S L L+ES+I RL +YY+ TK LP W+Y TA LV Sbjct: 25 WVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPDTARLLV 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_METMP (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis GN=rps15p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.727e-26 Identity = 57/126 (45.24%), Postives = 81/126 (64.29%), Query Frame = 2 Query: 5 WLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLV 382 W+ +S++D+E I + AK G + IG ILRD +G+ VK +TG + I+K G E+PEDL++L+KKA+ +R HLE N +D S L L+ES+I RL +YY+ TK LP W+Y TA LV Sbjct: 25 WVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPNVKLITGKSVSSIMKEAGFYAEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRYSPETARLLV 150
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_CENSY (30S ribosomal protein S15P/S13e OS=Cenarchaeum symbiosum GN=rps15p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.561e-26 Identity = 54/123 (43.90%), Postives = 84/123 (68.29%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTA 370 SW++ +VED I K+AK+GL PSQIG LRD H I + +TG + +I++ HG PE+PEDL ++++KAV +++HL N+ D+ + L L+E+++HRL YYK+ ++P WKY+S A Sbjct: 24 SWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKSVVA 145
BLAST of CF417210 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26 Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 2 Query: 2 SWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 385 +W +S ++VE + K + T SQ+G+ILRD +G+ + VTG K+ ILK +G P++PEDL +LIKKA+ + KHL+ N KD +K L L ES++ RL +YY T LP W Y TA L++ Sbjct: 24 AWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVYSPATAEILIS 151 The following BLAST results are available for this feature:
BLAST of CF417210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417210 ID=CF417210; Name=CF417210; organism=Citrus sinensis; type=EST; length=643bpback to top |