CF417212

Overview
NameCF417212
Unique NameCF417212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.672e-29
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S +DLLN PGETY+VTLTE GTY FYC PHQGAGMVG VTVN
Sbjct:   55 ISMSEDDLLNAPGETYSVTLTESGTYKFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 72.4034 bits (176), Expect = 1.672e-29
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            +E+LLGG+DG LA +PS+FSV SGEKI   N AGFPH+  FD DE+PSG
Sbjct:    1 VEILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.693e-29
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I ++ EDLLN PGE Y V LTEKG+YSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 73.9442 bits (180), Expect = 3.693e-29
Identity = 35/49 (71.43%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IEVLLGGDDG LA +P+ FSV +GEKIV  N AGFPH+  FD DEIPSG
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.809e-29
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN PGETYAVTLTEKGTYSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 99

HSP 2 Score: 65.0846 bits (157), Expect = 4.809e-29
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            EVLLG  DG L   PS+FSV SGEKIV  N AGFPH+  FD DEIP+G
Sbjct:    2 EVLLGSSDGGLVFEPSTFSVASGEKIVFKNNAGFPHNVVFDEDEIPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SOLCR (Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.383e-28
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  EDLLN PGETY+VTL+EKGTYSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMPEEDLLNAPGETYSVTLSEKGTYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 68.1662 bits (165), Expect = 1.383e-28
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IEVLLG DDG LA VP +FS+ +GEKI   N AGFPH+  FD DEIP+G
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSISAGEKITFKNNAGFPHNVVFDEDEIPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.383e-28
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S E+ LNGPGETY+VTL+EKGTY+FYC PHQGAGMVG VTVN
Sbjct:   55 ISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99

HSP 2 Score: 68.5514 bits (166), Expect = 1.383e-28
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IEVLLG DDG LA VP +FSV +GEKI   N AGFPH+  FD DEIP+G
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-28
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +   DLLN PGETYAVTLTEKG+YSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 68.9366 bits (167), Expect = 1.383e-28
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            ++VLLG DDG LA VP++FSV SGEKI   N AGFPH+  FD DEIPSG
Sbjct:    1 LDVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.052e-28
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I ++ EDLL+ PG+ Y V LT+KG+YSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 72.7886 bits (177), Expect = 3.052e-28
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IE+LLGGDDG LA VP++F+V SGEKI   N AGFPH+  FD DEIPSG
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_SOLTU (Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.738e-28
Identity = 34/45 (75.56%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I ++ EDLLN  GETY+VTL+EKGTY+FYC PHQGAGMVG VTVN
Sbjct:   55 ISMAEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99

HSP 2 Score: 69.3218 bits (168), Expect = 6.738e-28
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            ++VLLGGDDG LA +P +FSV +GEKI   N AGFPH+  FD DEIP+G
Sbjct:    1 LDVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_FRIAG (Plastocyanin, chloroplastic OS=Fritillaria agrestis GN=PETE PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.174e-27
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  EDLLN PGET++VTL EKGTYS YC PHQGAGM G +TVN
Sbjct:  122 ISMKEEDLLNAPGETFSVTLKEKGTYSIYCSPHQGAGMAGKITVN 166

HSP 2 Score: 69.707 bits (169), Expect = 3.174e-27
Identity = 41/104 (39.42%), Postives = 53/104 (50.96%), Query Frame = 3 
Query:  126 GLKAGATPARVVGSTMKASASAVPKLSIKATLKD-VGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKAG  P     S    +  +    S+KA+ K+ +G                  +EVLLGG DG LA VPS+  V +GE +V  N AGFPH+  FD DE+P G
Sbjct:   16 GLKAGRAPTTPSTSIKPPTPMS---FSVKASFKEAIGTALVATAAGAVLASNALAVEVLLGGSDGSLAFVPSNIEVAAGETVVFKNNAGFPHNVLFDEDEVPKG 116
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_PHAVU (Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.274e-27
Identity = 34/45 (75.56%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  E+LLN PGETY VTL  KGTYSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGAGMVGKVTVN 99

HSP 2 Score: 68.1662 bits (165), Expect = 4.274e-27
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            +EVLLG  DG L  VPS FSV SGEKIV  N AGFPH+  FD DEIP+G
Sbjct:    1 LEVLLGSGDGSLVFVPSEFSVPSGEKIVFKNNAGFPHNVVFDEDEIPAG 49
The following BLAST results are available for this feature:
BLAST of CF417212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_SAMNI1.672e-2977.78Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]
PLAS_CUCPE3.693e-2975.56Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_LACSA4.809e-2986.67Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1[more]
PLAS_SOLCR1.383e-2880.00Plastocyanin OS=Solanum crispum GN=PETE PE=1 SV=1[more]
PLAS1_TOBAC1.383e-2877.78Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_MERPE1.383e-2880.00Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_CUCSA3.052e-2868.89Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]
PLAS_SOLTU6.738e-2875.56Plastocyanin OS=Solanum tuberosum GN=PETE PE=1 SV=... [more]
PLAS_FRIAG3.174e-2771.11Plastocyanin, chloroplastic OS=Fritillaria agresti... [more]
PLAS_PHAVU4.274e-2775.56Plastocyanin OS=Phaseolus vulgaris GN=PETE PE=1 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-142 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417212 ID=CF417212; Name=CF417212; organism=Citrus sinensis; type=EST; length=684bp
AAACCAACCTCCCTTCTCCTCGAGTGTTGATTTCCAATAACTCAAAAAGA
AAAAACAGCANAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGC
AGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAG
CCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAG
CTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGNCAC
AGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTNTTGC
TTGGTGGTGATGATGGGTGCTTGGCTTNTGTTCCNAGCTCTTTCTCTGTC
ANCTCCGGTGAAAAGATTGTGNTCAANAACNATGCTGGGTTCCCACACGA
CGATGNTTTCGATGANGATGAGATTCCGAGTGGGTGTTGATGTTTCCANA
AATCTNCGTGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACTTATG
CTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTNCCCTCAC
CAAGGAGCTGGCATGGTTGGACNAGTGACTGTTAATTAAGTNCACATTCA
GACTTTGTTTGCCTCATCTCATTGGTTATCGNTCTCTTCTTTTTGCATTT
TATGAGTATCATACATATTTTCATTTGGTGAGAA
back to top