CF417212

Overview
NameCF417212
Unique NameCF417212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_CAPBU (Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.565e-27
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +   DLLN  GETY V LTE GTYSFYC PHQGAGMVG VTVN
Sbjct:   55 ISMDENDLLNAAGETYEVALTEAGTYSFYCAPHQGAGMVGKVTVN 99

HSP 2 Score: 70.8626 bits (172), Expect = 5.565e-27
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            IEVLLGG DG LA VP+ FS+  GEKIV  N AGFPH+  FD DEIPSG
Sbjct:    1 IEVLLGGGDGSLAFVPNDFSIAKGEKIVFKNNAGFPHNVVFDEDEIPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_VICFA (Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.319e-25
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +  EDLLN PGETY+V L  KGTY FYC PHQGAGMVG VTVN
Sbjct:   55 ISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 99

HSP 2 Score: 65.0846 bits (157), Expect = 1.319e-25
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            +EVLLG  DG LA VP+SF V +G+ IV  N AGFPH+  FD DEIPSG
Sbjct:    1 VEVLLGASDGGLAFVPNSFEVSAGDTIVFKNNAGFPHNVVFDEDEIPSG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_PETCR (Plastocyanin A/B OS=Petroselinum crispum GN=PETE PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-23
Identity = 31/43 (72.09%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            +S  + LNG GETY VTLTEKGTY FYC PH GAGM G VTVN
Sbjct:   55 ISQPEYLNGAGETYEVTLTEKGTYKFYCEPHAGAGMKGEVTVN 97

HSP 2 Score: 62.003 bits (149), Expect = 1.166e-23
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            EV LG DDG L   PSSF+V +GEKI   N AGFPH+  FD DE+P+G
Sbjct:    2 EVKLGSDDGGLVFSPSSFTVAAGEKITFKNNAGFPHNIVFDEDEVPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_DAUCA (Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.754e-22
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTV 583
            +S ED L+G GE++ VTLTEKGTY FYC PH GAGM G VTV
Sbjct:   55 ISQEDYLDGAGESFTVTLTEKGTYKFYCEPHAGAGMKGEVTV 96

HSP 2 Score: 60.4622 bits (145), Expect = 2.754e-22
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            EV LG DDG L   PSSFSV  GE I   N AGFPH+  FD DE+P+G
Sbjct:    2 EVKLGADDGALVFSPSSFSVAKGEGISFKNNAGFPHNIVFDEDEVPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_GINBI (Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.584e-22
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  452 IXVSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            I +S EDLLN PGETY V L +KGTY F+C PHQG GM G VTVN
Sbjct:   55 ISMSEEDLLNAPGETYVVKLDKKGTYRFFCAPHQGIGMSGIVTVN 99

HSP 2 Score: 57.3806 bits (137), Expect = 3.584e-22
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  288 IEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            +EVL+GG  G LA +P+   V +GE+IV  N AGFPH+  FD D +P+G
Sbjct:    1 VEVLMGGSGGELAFIPNELQVNAGEQIVFKNNAGFPHNVIFDEDAVPAG 49
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSJ (Plastocyanin, chloroplastic OS=Oryza sativa subsp. japonica GN=PETE PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.290e-21
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            +S E+ LN PGET++VTLT  GTY FYC PH GAGMVG VTVN
Sbjct:  112 ISQEEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154

HSP 2 Score: 55.4546 bits (132), Expect = 1.290e-21
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            EVLLG + G L   P+ F+V SGE I   N AGFPH+  FD D +PSG
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSG 106
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_ORYSI (Plastocyanin, chloroplastic OS=Oryza sativa subsp. indica GN=PETE PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.290e-21
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            +S E+ LN PGET++VTLT  GTY FYC PH GAGMVG VTVN
Sbjct:  112 ISQEEYLNAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 154

HSP 2 Score: 55.4546 bits (132), Expect = 1.290e-21
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            EVLLG + G L   P+ F+V SGE I   N AGFPH+  FD D +PSG
Sbjct:   59 EVLLGANGGVLVFEPNDFTVKSGETITFKNNAGFPHNVVFDEDAVPSG 106
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_PHYPA (Plastocyanin, chloroplastic OS=Physcomitrella patens GN=PETE PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.054e-20
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            ++ ED LNGP E++++T    GTY FYC PHQGAGM G VTV+
Sbjct:  126 INHEDYLNGPNESFSITFKTPGTYEFYCEPHQGAGMKGVVTVS 168

HSP 2 Score: 59.6918 bits (143), Expect = 1.054e-20
Identity = 36/105 (34.29%), Postives = 47/105 (44.76%), Query Frame = 3 
Query:  126 GLKAG--ATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            GLKA   A PAR+  +++   A  V   +    LK VG                    V +GGDDG L   P   SV +GE +   N  GFPH+  FD D +P+G
Sbjct:   16 GLKAETKAAPARLSSTSVVRMAPVVRASASSDALKTVGKALLAASSSLLLVASANAATVKMGGDDGALGFYPKDISVAAGESVTFVNNKGFPHNVVFDEDAVPAG 120
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_HORVU (Plastocyanin, chloroplastic OS=Hordeum vulgare GN=PETE PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.029e-20
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTVN 586
            +S E+ L  PGET++VTLT  GTY FYC PH GAGMVG VTVN
Sbjct:  113 ISQEEYLTAPGETFSVTLTVPGTYGFYCEPHAGAGMVGKVTVN 155

HSP 2 Score: 53.1434 bits (126), Expect = 3.029e-20
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 3 
Query:  291 EVLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            +VLLG + G L   P+ FSV +GE I   N AG+PH+  FD D +PSG
Sbjct:   60 DVLLGANGGVLVFEPNDFSVKAGETITFKNNAGYPHNVVFDEDAVPSG 107
[Close]
BLAST of CF417212 vs. ExPASy Swiss-Prot
Match: PLAS_CHLRE (Plastocyanin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETE PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 9.288e-19
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 2 
Query:  458 VSTEDLLNGPGETYAVTLTEKGTYSFYCXPHQGAGMVGXVTV 583
            +S +D LN PGETY+V LT  G Y +YC PHQGAGMVG + V
Sbjct:  103 ISRDDYLNAPGETYSVKLTAAGEYGYYCEPHQGAGMVGKIIV 144

HSP 2 Score: 51.9878 bits (123), Expect = 9.288e-19
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  294 VLLGGDDGCLAXVPSSFSVXSGEKIVXXNXAGFPHDDXFDXDEIPSG 434
            V LG D G L  VP + ++ SGE +   N AGFPH+  FD D IPSG
Sbjct:   51 VKLGADSGALEFVPKTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSG 97
The following BLAST results are available for this feature:
BLAST of CF417212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_CAPBU5.565e-2773.33Plastocyanin OS=Capsella bursa-pastoris GN=PETE PE... [more]
PLAS_VICFA1.319e-2573.33Plastocyanin OS=Vicia faba GN=PETE PE=1 SV=1[more]
PLAS_PETCR1.166e-2372.09Plastocyanin A/B OS=Petroselinum crispum GN=PETE P... [more]
PLAS_DAUCA2.754e-2269.05Plastocyanin OS=Daucus carota GN=PETE PE=1 SV=1[more]
PLAS_GINBI3.584e-2268.89Plastocyanin OS=Ginkgo biloba GN=PETE PE=1 SV=1[more]
PLAS_ORYSJ1.290e-2169.77Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_ORYSI1.290e-2169.77Plastocyanin, chloroplastic OS=Oryza sativa subsp.... [more]
PLAS_PHYPA1.054e-2058.14Plastocyanin, chloroplastic OS=Physcomitrella pate... [more]
PLAS_HORVU3.029e-2067.44Plastocyanin, chloroplastic OS=Hordeum vulgare GN=... [more]
PLAS_CHLRE9.288e-1961.90Plastocyanin, chloroplastic OS=Chlamydomonas reinh... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-142 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417212 ID=CF417212; Name=CF417212; organism=Citrus sinensis; type=EST; length=684bp
AAACCAACCTCCCTTCTCCTCGAGTGTTGATTTCCAATAACTCAAAAAGA
AAAAACAGCANAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGC
AGCTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAG
CCAGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAG
CTCAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGNCAC
AGCTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTNTTGC
TTGGTGGTGATGATGGGTGCTTGGCTTNTGTTCCNAGCTCTTTCTCTGTC
ANCTCCGGTGAAAAGATTGTGNTCAANAACNATGCTGGGTTCCCACACGA
CGATGNTTTCGATGANGATGAGATTCCGAGTGGGTGTTGATGTTTCCANA
AATCTNCGTGTCTACAGAAGACCTTCTCAATGGTCCTGGAGAGACTTATG
CTGTTACTCTGACTGAAAAAGGCACTTACTCTTTCTACTGTTNCCCTCAC
CAAGGAGCTGGCATGGTTGGACNAGTGACTGTTAATTAAGTNCACATTCA
GACTTTGTTTGCCTCATCTCATTGGTTATCGNTCTCTTCTTTTTGCATTT
TATGAGTATCATACATATTTTCATTTGGTGAGAA
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