CF417215

Overview
NameCF417215
Unique NameCF417215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.075e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.404e-18
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            + + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.395e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  323 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 481
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  323 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 481
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.128e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 2
Query:  323 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 481
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.100e-18
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 253
            M I VKTLTGK I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   26 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 256
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
BLAST of CF417215 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 2
Query:  323 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 481
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
The following BLAST results are available for this feature:
BLAST of CF417215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
NEDD8_HUMAN1.075e-1856.58NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN1.075e-1856.58NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ1.404e-1853.95NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RS27A_ICTPU2.395e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RS27A_RAT3.128e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE3.128e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RUB3_ARATH9.100e-1855.26NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI2.027e-1753.95NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO2.648e-1751.95Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RS27A_DROME3.458e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-145 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_G2 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417215 ID=CF417215; Name=CF417215; organism=Citrus sinensis; type=EST; length=602bp
GATGGTTCTTTCCTCATCTGCAGCCATGCAGATCTTCGTGAAAACCCTAA
CGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGACAAT
GTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCG
TCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACT
ACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGCCTCCGTGGT
GGCGCGAAGAAGCGCAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAA
GCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTTG
ATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCTGAG
TGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTGCGG
CAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATTGA
GATTAAGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGGTT
TTTGTGGNTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATATAC
TT
back to top