CF417224

Overview
NameCF417224
Unique NameCF417224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            F+TE EA+ +ANDT+ GLA  + +N+L+R  R+S+A++ G+V +N        AP+GG K+SG GRE  ++G+D +L +K V
Sbjct:  406 FRTEREAVELANDTHYGLAGAVISNDLERCERISKAIQSGIVWINCSQPCFVQAPWGGNKRSGFGRELGQWGLDNYLSVKQV 487          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLGDMNRK*W 281
            F +E+EA+ +ANDT  GLA+ +F+ +L+R  RVS+ LE G V VN        AP+GG+K+SG GRE  ++G++ +L IK V   D++ + W
Sbjct:  404 FSSEDEALELANDTEYGLASAVFSKDLERCERVSKLLESGAVWVNCSQPCFVHAPWGGIKRSGFGRELGEWGIENYLNIKQV-TSDISNEPW 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: LADH_METJA (Lactaldehyde dehydrogenase OS=Methanocaldococcus jannaschii GN=MJ1411 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.153e-13
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   15 EEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            EEE I +AN T  GL + IFTN++ ++ + +E LE+G V +N+  L   +  PFGGVK+SGLGREG KY M+E   IK + +
Sbjct:  380 EEEMIDIANSTEYGLHSAIFTNDINKSLKFAENLEFGGVVINDSSLFRQDNMPFGGVKKSGLGREGVKYAMEEMSNIKTIII 461          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: LADH_METMP (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis GN=MMP1487 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 3
Query:    9 KTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            K  EEA+++AN++  GL A +FTNN+    ++++ LEYG + +N       +  PFGGVK+SGLGREG KY ++E  E K V +
Sbjct:  379 KDSEEAVNIANNSKYGLQAGLFTNNINNAMKIADELEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMSETKTVVI 462          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: LADH_METM7 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0731 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    9 KTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            K  EEA+ +AN++  GL A +FTN++ +  +++++LEYG + +N       +  PFGGVK+SGLGREG KY ++E  E K V +
Sbjct:  379 KNSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTVVI 462          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH_ENCBU (Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN=ALDH PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FK  +E I  ANDT+ GLAA +FT N+    +V+ +LE G V VN        APFGG K SG GRE   YG++ FLE+K V
Sbjct:  408 FKDVDEVIERANDTSYGLAAAVFTKNIDTALKVANSLEAGTVWVNTYNHFAFQAPFGGYKMSGQGREFGHYGLEAFLEVKTV 489          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: LADH_METM5 (Lactaldehyde dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0090 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    9 KTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEG-LISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            K  EEA+ +AN++  GL A +FTN++ +  +++++LEYG + +N       +  PFGGVK+SGLGREG KY ++E  E K + +
Sbjct:  379 KDSEEAVSIANNSKYGLQAGVFTNDINKAMKIADSLEYGGIMINSSPTFRKDNMPFGGVKKSGLGREGIKYTVEEMCETKTIVI 462          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            F TE+EAI +AND+  GLA  + +N+L+R  RVS+A + G+V VN        AP+GG K+SG GRE  ++G++ +L +K V
Sbjct:  404 FSTEDEAIQLANDSQYGLAGAVLSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRSGFGRELGEWGLENYLSVKQV 485          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: XYLG_PSEPU (2-hydroxymuconic semialdehyde dehydrogenase OS=Pseudomonas putida GN=xylG PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            F +EEEAI +AN    GLA+ I+T N++R  RV+  +E G+V VN   +      FGG KQSG+GREG  + ++ + E+K +C+
Sbjct:  401 FDSEEEAIELANSLPYGLASAIWTENVRRAHRVAGQIEAGIVWVNSWFLRDLRTAFGGSKQSGIGREGGVHSLEFYTELKNICV 484          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH_EMENI (Aldehyde dehydrogenase OS=Emericella nidulans GN=aldA PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FK E EAI + N T+ GLAA + T N+    RVS AL+ G V +N   + +  APFGG KQSGLGRE   Y ++ + +IK V
Sbjct:  406 FKDEAEAIKIGNSTDYGLAAAVHTKNVNTAIRVSNALKAGTVWINNYNMISYQAPFGGFKQSGLGRELGSYALENYTQIKTV 487          
The following BLAST results are available for this feature:
BLAST of CF417224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
BADH_ORYSJ1.084e-1343.90Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_BETVU1.849e-1343.48Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
LADH_METJA3.153e-1347.56Lactaldehyde dehydrogenase OS=Methanocaldococcus j... [more]
LADH_METMP4.118e-1344.05Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
LADH_METM74.118e-1342.86Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
ALDH_ENCBU5.379e-1348.78Aldehyde dehydrogenase OS=Enchytraeus buchholzi GN... [more]
LADH_METM57.025e-1341.67Lactaldehyde dehydrogenase OS=Methanococcus maripa... [more]
BADH2_ARATH9.175e-1345.12Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
XYLG_PSEPU1.198e-1242.862-hydroxymuconic semialdehyde dehydrogenase OS=Pse... [more]
ALDH_EMENI1.198e-1247.56Aldehyde dehydrogenase OS=Emericella nidulans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-154 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417224 ID=CF417224; Name=CF417224; organism=Citrus sinensis; type=EST; length=709bp
TATGCTTCAAAACTGAGGAGGAAGCTATCCATATGGCCAATGATACCAAT
GCAGGGTTAGCTGCTTATATATTTACAAACAATCTTCAACGTACATGGCG
TGTCTCTGAAGCTCTTGAATATGGACTCGTCGGTGTTAATGAAGGATTAA
TTTCAACAGAGGTGGCTCCTTTTGGTGGTGTTAAACAATCTGGTCTTGGA
CGGGAAGGTTCAAAGTATGGGATGGATGAATTCCTGGAAATAAAATATGT
GTGCTTGGGAGACATGAACAGAAAATGATGGGCCAGTTGTGTACCTGTAT
GTTACCGGGCTTATGGAGAAAGAAGGAAGGAGCCTGTAGTACTGCCTTTG
AACTGTATTTTGAAGACGGATTGGAATAGTGTGAGCCTCAAGCGTTTGGA
TGTGGAGGTAGTAGTGAGCCATAGTTGGTTTGCTATTGATACCCCATGTA
CATAAATAAGTTTGCAAAATGGAACTTGAATGTCTAGTAGTGAGCCATAG
GTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATGGAA
CTTGNAATGTCTGGTGTCATAAAGATTTTGCCGTCAACACCCAAAACCTA
ATGGGAAAGAACTTTTCTTCTTTTGGTATCATTACATTTTCCCNCGGGGT
TATGTTTCTCTTGATCAGATATGAATCAAGATTCCATGGTATTTATAACC
CCCCATCTT
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