CF417224

Overview
NameCF417224
Unique NameCF417224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A3_HUMAN (Aldehyde dehydrogenase family 1 member A3 OS=Homo sapiens GN=ALDH1A3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 41/90 (45.56%), Postives = 53/90 (58.89%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDMN 269
            FK+ EE I  AN T+ GL A +FT NL +  +++ ALE G V +N        APFGG K SG GRE  +Y + E+ E+K V   LGD N
Sbjct:  422 FKSIEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWINCYNALYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLGDKN 511          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ ++ I  AN+T  GLAA +FT +L R   VS AL+ G+V VN  +I +   PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  411 FKSIDDVIKRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 260
            F+TEEE I  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  ++ + ++K V +G
Sbjct:  391 FETEEEVIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKMSGVGRENGRAAVEHYTQVKSVYVG 475          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCLG 260
            F+TEEEAI  AN T+ GLAA +FT +L R  RV   L+ G   +N   ++   APFGGVK SG+GRE  +  +  + ++K V +G
Sbjct:  391 FETEEEAIARANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVQHYTQVKSVYVG 475          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BETB_BACSU (Betaine aldehyde dehydrogenase OS=Bacillus subtilis GN=gbsA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            F +EEE I +ANDT  GLA  +++ ++++  RV+  L  G V +N+       AP+GG KQSG GRE  K G++E+ E+K+V
Sbjct:  395 FSSEEEVIELANDTIYGLAGAVWSKDIEKCERVAARLRMGTVWINDFHPYFAQAPWGGYKQSGFGRELGKIGLEEYTEVKHV 476          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALD1_STAHJ (Putative aldehyde dehydrogenase SH0913 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0913 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   18 EEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            +EAI +ANDT  GLA Y+   + +   +V+ ++E G + +NE     ++ PFGG KQSG+GRE   YG++EFLE+K +
Sbjct:  394 DEAIKIANDTKYGLAGYVIGKDKETLQKVARSIEAGRIEINEAGNQPDL-PFGGYKQSGIGREWGDYGIEEFLEVKSI 470          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL9A1_PONAB (4-trimethylaminobutyraldehyde dehydrogenase OS=Pongo abelii GN=ALDH9A1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDM 266
            F TE E +  ANDT  GLAA +FT ++QR  RV   L+ G   +N   +S    PFGG K+SG GRE  +  ++ + ++K VC  +GD+
Sbjct:  402 FDTEAEVLERANDTTFGLAAGVFTRDIQRAHRVVAELQAGTCFINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTVCVEMGDV 490          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL9A1_HUMAN (4-trimethylaminobutyraldehyde dehydrogenase OS=Homo sapiens GN=ALDH9A1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVC--LGDM 266
            F TE E +  ANDT  GLAA +FT ++QR  RV   L+ G   +N   +S    PFGG K+SG GRE  +  ++ + ++K VC  +GD+
Sbjct:  402 FDTEAEVLERANDTTFGLAAGVFTRDIQRAHRVVAELQAGTCFINNYNVSPVELPFGGYKKSGFGRENGRVTIEYYSQLKTVCVEMGDV 490          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ +E I  AN+T  GLAA +FT +L +   VS AL+ G V VN  + ++   PFGG K SG GRE  +YG+ E+ E+K V +
Sbjct:  150 FKSLDEVIKRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTM 233          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL8A1_BOVIN (Aldehyde dehydrogenase family 8 member A1 OS=Bos taurus GN=ALDH8A1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            F +EEE I  AN+   GLAA +++ N+ R  RV++ L+ GLV  N  LI     PFGG+K SG+GREG+K   + F E+K +
Sbjct:  402 FDSEEEVIQRANNVKYGLAATVWSGNVGRVHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGVGREGAKDSYEFFTEVKTI 483          
The following BLAST results are available for this feature:
BLAST of CF417224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
AL1A3_HUMAN5.947e-1245.56Aldehyde dehydrogenase family 1 member A3 OS=Homo ... [more]
AL1A1_RAT5.947e-1245.24Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]
BETB_RHOS57.767e-1243.53Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS47.767e-1244.71Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_BACSU7.767e-1242.68Betaine aldehyde dehydrogenase OS=Bacillus subtili... [more]
ALD1_STAHJ7.767e-1243.59Putative aldehyde dehydrogenase SH0913 OS=Staphylo... [more]
AL9A1_PONAB7.767e-1241.574-trimethylaminobutyraldehyde dehydrogenase OS=Pon... [more]
AL9A1_HUMAN7.767e-1241.574-trimethylaminobutyraldehyde dehydrogenase OS=Hom... [more]
ALDH2_MACPR1.014e-1145.24Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL8A1_BOVIN1.014e-1145.12Aldehyde dehydrogenase family 8 member A1 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-154 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417224 ID=CF417224; Name=CF417224; organism=Citrus sinensis; type=EST; length=709bp
TATGCTTCAAAACTGAGGAGGAAGCTATCCATATGGCCAATGATACCAAT
GCAGGGTTAGCTGCTTATATATTTACAAACAATCTTCAACGTACATGGCG
TGTCTCTGAAGCTCTTGAATATGGACTCGTCGGTGTTAATGAAGGATTAA
TTTCAACAGAGGTGGCTCCTTTTGGTGGTGTTAAACAATCTGGTCTTGGA
CGGGAAGGTTCAAAGTATGGGATGGATGAATTCCTGGAAATAAAATATGT
GTGCTTGGGAGACATGAACAGAAAATGATGGGCCAGTTGTGTACCTGTAT
GTTACCGGGCTTATGGAGAAAGAAGGAAGGAGCCTGTAGTACTGCCTTTG
AACTGTATTTTGAAGACGGATTGGAATAGTGTGAGCCTCAAGCGTTTGGA
TGTGGAGGTAGTAGTGAGCCATAGTTGGTTTGCTATTGATACCCCATGTA
CATAAATAAGTTTGCAAAATGGAACTTGAATGTCTAGTAGTGAGCCATAG
GTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATGGAA
CTTGNAATGTCTGGTGTCATAAAGATTTTGCCGTCAACACCCAAAACCTA
ATGGGAAAGAACTTTTCTTCTTTTGGTATCATTACATTTTCCCNCGGGGT
TATGTTTCTCTTGATCAGATATGAATCAAGATTCCATGGTATTTATAACC
CCCCATCTT
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