CF417224

Overview
NameCF417224
Unique NameCF417224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: YF19_SCHPO (Putative aldehyde dehydrogenase-like protein C9E9.09c OS=Schizosaccharomyces pombe GN=SPAC9E9.09c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FKT EEAI   N++  GLAA + TNN+    +VS ALE G V VN   +     PFGG K+SG+GRE   YG+  + + K V
Sbjct:  412 FKTIEEAIRRGNNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSYGLTNYTQTKAV 493          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FKTE EA+ +ANDT+ GLA  + +++L+R  R+++ +  G+V  N    +   AP+GG K+SG GRE  ++G++ +L +K V
Sbjct:  406 FKTESEAVELANDTHYGLAGGVISDDLERCERIAKVIHSGIVWKNCSQPTLVQAPWGGNKRSGFGRELGEWGLENYLSVKQV 487          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL8A1_MOUSE (Aldehyde dehydrogenase family 8 member A1 OS=Mus musculus GN=Aldh8a1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            F +EEE I  AN    GLAA +++ ++ R  RV++ L+ GLV  N  LI     PFGG+K SG+GREG+K   D F EIK + +
Sbjct:  402 FDSEEEVITRANSVRYGLAATVWSKDVGRIHRVAKKLQSGLVWTNCWLIRELNLPFGGMKSSGIGREGAKDSYDFFTEIKTITI 485          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALD1_STAES (Putative aldehyde dehydrogenase SE_1720 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1720 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:   18 EEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            +EAI +ANDT  GLA Y+   +      V+ ++E G + +NE     ++ PFGG K+SGLGRE   YG++EFLE+K +
Sbjct:  394 DEAIEIANDTKYGLAGYVIGKDKDTLRHVARSIEAGTIEINEAGRKPDL-PFGGYKESGLGREWGDYGIEEFLEVKSI 470          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALD1_STAEQ (Putative aldehyde dehydrogenase SERP1729 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1729 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:   18 EEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            +EAI +ANDT  GLA Y+   +      V+ ++E G + +NE     ++ PFGG K+SGLGRE   YG++EFLE+K +
Sbjct:  394 DEAIEIANDTKYGLAGYVIGKDKDTLRHVARSIEAGTIEINEAGRKPDL-PFGGYKESGLGREWGDYGIEEFLEVKSI 470          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: GABD_DEIRA (Succinate-semialdehyde dehydrogenase [NADP+] OS=Deinococcus radiodurans GN=ssdA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    9 KTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            + E+EA+ +AN +  GL   +F+++L R  RV+E L+ G+V +N    S    PFGGVK+SG GRE S  GM EF   K V
Sbjct:  383 RDEDEAVALANASTYGLGGAVFSSDLDRAQRVAERLDTGMVWINHPTSSAADLPFGGVKRSGFGRELSSMGMLEFTNQKLV 463          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FKT EE +  AND+  GLAA +FT +L +   +S+AL+ G V +N   +    +PFGG K SG GRE  +YG+  + E+K V
Sbjct:  429 FKTIEEVVGRANDSKYGLAAAVFTKDLDKANYLSQALQAGTVWINCYDVFGAQSPFGGYKMSGSGRELGEYGLQAYTEVKTV 510          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A3_RAT (Aldehyde dehydrogenase family 1 member A3 OS=Rattus norvegicus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK  EE I  AN T+ GL A +FT NL +  +++ ALE G V VN        APFGG K SG GRE  +Y + E+ E+K V +
Sbjct:  422 FKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLASALESGTVWVNCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTI 505          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_SHEEP (Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ ++ I  AN+T  GL+A IFTN++ +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG  E+ E+K V +
Sbjct:  411 FKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTI 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_MOUSE (Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1 PE=1 SV=5)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 36/84 (42.86%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ ++ I  AN+T  GLAA +FT +L +   VS AL+ G+V VN  ++ +   PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  411 FKSVDDVIKRANNTTYGLAAGLFTKDLDKAITVSSALQAGVVWVNCYMMLSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
The following BLAST results are available for this feature:
BLAST of CF417224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
YF19_SCHPO1.325e-1146.34Putative aldehyde dehydrogenase-like protein C9E9.... [more]
BADH_HORVU1.325e-1140.24Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
AL8A1_MOUSE1.730e-1145.24Aldehyde dehydrogenase family 8 member A1 OS=Mus m... [more]
ALD1_STAES2.260e-1143.59Putative aldehyde dehydrogenase SE_1720 OS=Staphyl... [more]
ALD1_STAEQ2.260e-1143.59Putative aldehyde dehydrogenase SERP1729 OS=Staphy... [more]
GABD_DEIRA2.951e-1144.44Succinate-semialdehyde dehydrogenase [NADP+] OS=De... [more]
ALDH2_MOUSE2.951e-1143.90Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]
AL1A3_RAT2.951e-1145.24Aldehyde dehydrogenase family 1 member A3 OS=Rattu... [more]
AL1A1_SHEEP2.951e-1144.05Retinal dehydrogenase 1 OS=Ovis aries GN=ALDH1A1 P... [more]
AL1A1_MOUSE2.951e-1142.86Retinal dehydrogenase 1 OS=Mus musculus GN=Aldh1a1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-154 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417224 ID=CF417224; Name=CF417224; organism=Citrus sinensis; type=EST; length=709bp
TATGCTTCAAAACTGAGGAGGAAGCTATCCATATGGCCAATGATACCAAT
GCAGGGTTAGCTGCTTATATATTTACAAACAATCTTCAACGTACATGGCG
TGTCTCTGAAGCTCTTGAATATGGACTCGTCGGTGTTAATGAAGGATTAA
TTTCAACAGAGGTGGCTCCTTTTGGTGGTGTTAAACAATCTGGTCTTGGA
CGGGAAGGTTCAAAGTATGGGATGGATGAATTCCTGGAAATAAAATATGT
GTGCTTGGGAGACATGAACAGAAAATGATGGGCCAGTTGTGTACCTGTAT
GTTACCGGGCTTATGGAGAAAGAAGGAAGGAGCCTGTAGTACTGCCTTTG
AACTGTATTTTGAAGACGGATTGGAATAGTGTGAGCCTCAAGCGTTTGGA
TGTGGAGGTAGTAGTGAGCCATAGTTGGTTTGCTATTGATACCCCATGTA
CATAAATAAGTTTGCAAAATGGAACTTGAATGTCTAGTAGTGAGCCATAG
GTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATGGAA
CTTGNAATGTCTGGTGTCATAAAGATTTTGCCGTCAACACCCAAAACCTA
ATGGGAAAGAACTTTTCTTCTTTTGGTATCATTACATTTTCCCNCGGGGT
TATGTTTCTCTTGATCAGATATGAATCAAGATTCCATGGTATTTATAACC
CCCCATCTT
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