CF417224

Overview
NameCF417224
Unique NameCF417224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_BOVIN (Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ ++ I  AN+T  GL+A IFTN++ +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG  E+ E+K V +
Sbjct:  411 FKSLDDVIKRANNTFYGLSAGIFTNDIDKAITVSSALQSGTVWVNCYSVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTVTI 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A7_MOUSE (Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculus GN=Aldh1a7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ ++ I  AN+T  GLAA +FT +L +   VS AL+ G+V VN  L      PFGG K SG GRE  ++G+ E+ E+K V +
Sbjct:  411 FKSMDDVIKRANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELKTVAM 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FK+ ++ I  AN+T  GL+A +FTN++ +   +S AL+ G V VN   + T   PFGG K SG GRE  +YG  E+ E+K V
Sbjct:  411 FKSLDDVIKRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FKT +E I  AN+T  GLAA +FT ++ +    + AL+ G V VN     +   PFGG K SG GRE  +YG+ E+ E+K V +
Sbjct:  419 FKTIDEVIKRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTVTI 502          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH1_MACPR (Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelides proboscideus GN=ALDH1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  411 FKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: ALDH1_ELEED (Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulus edwardii GN=ALDH1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/84 (44.05%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ +E I  AN+T  GL A +FT +L +   VS AL+ G V VN  L ++  +P GG K SG GRE  +YG+ E+ E+K V +
Sbjct:  411 FKSLDEVIKRANNTYYGLVAGVFTKDLDKAVTVSSALQAGTVWVNCYLAASAQSPAGGFKMSGHGREMGEYGIHEYTEVKTVTM 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A7_RAT (Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norvegicus GN=Aldh1a7 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK+ +E I  AN+T  GLAA +FT +L R   VS AL+ G V VN  L  +   PFGG K SG GRE  + G+ E+ E+K V +
Sbjct:  411 FKSIDEVIKRANNTPYGLAAGVFTKDLDRAITVSSALQAGTVWVNCYLTLSVQCPFGGFKMSGNGREMGEQGVYEYTELKTVAM 494          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYVCL 257
            FK  EE I  AN T+ GL A +FT NL +  +++ ALE G V +N        APFGG K SG GRE  +Y + E+ E+K V +
Sbjct:  422 FKNLEEVIKRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTI 505          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            FK+ ++ I  AN+T  GL+A IFT +L +   VS AL+ G V VN   + +   PFGG K SG GRE  +YG+ ++ E+K V
Sbjct:  406 FKSLDDVIKRANNTTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTV 487          
BLAST of CF417224 vs. ExPASy Swiss-Prot
Match: PUUC_ECOLI (Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=puuC PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 3
Query:    6 FKTEEEAIHMANDTNAGLAAYIFTNNLQRTWRVSEALEYGLVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEFLEIKYV 251
            F +EE+A+ +AND+  GL A ++T +L R  R+S  L+ G V VN         PFGG KQSG GR+ S + +++F E+K +
Sbjct:  408 FTSEEQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTI 489          
The following BLAST results are available for this feature:
BLAST of CF417224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
AL1A1_BOVIN2.951e-1144.05Retinal dehydrogenase 1 OS=Bos taurus GN=ALDH1A1 P... [more]
AL1A7_MOUSE3.855e-1144.05Aldehyde dehydrogenase, cytosolic 1 OS=Mus musculu... [more]
AL1A1_MACFA3.855e-1143.90Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_CHICK3.855e-1142.86Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ALDH1_MACPR5.034e-1144.05Aldehyde dehydrogenase, cytosolic 1 OS=Macroscelid... [more]
ALDH1_ELEED5.034e-1144.05Aldehyde dehydrogenase, cytosolic 1 OS=Elephantulu... [more]
AL1A7_RAT5.034e-1146.43Aldehyde dehydrogenase, cytosolic 1 OS=Rattus norv... [more]
AL1A3_MOUSE5.034e-1144.05Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A1_RABIT5.034e-1143.90Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
PUUC_ECOLI6.575e-1141.46Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-154 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H1 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417224 ID=CF417224; Name=CF417224; organism=Citrus sinensis; type=EST; length=709bp
TATGCTTCAAAACTGAGGAGGAAGCTATCCATATGGCCAATGATACCAAT
GCAGGGTTAGCTGCTTATATATTTACAAACAATCTTCAACGTACATGGCG
TGTCTCTGAAGCTCTTGAATATGGACTCGTCGGTGTTAATGAAGGATTAA
TTTCAACAGAGGTGGCTCCTTTTGGTGGTGTTAAACAATCTGGTCTTGGA
CGGGAAGGTTCAAAGTATGGGATGGATGAATTCCTGGAAATAAAATATGT
GTGCTTGGGAGACATGAACAGAAAATGATGGGCCAGTTGTGTACCTGTAT
GTTACCGGGCTTATGGAGAAAGAAGGAAGGAGCCTGTAGTACTGCCTTTG
AACTGTATTTTGAAGACGGATTGGAATAGTGTGAGCCTCAAGCGTTTGGA
TGTGGAGGTAGTAGTGAGCCATAGTTGGTTTGCTATTGATACCCCATGTA
CATAAATAAGTTTGCAAAATGGAACTTGAATGTCTAGTAGTGAGCCATAG
GTGGTTTGCTATTGATACCCCATGTACATAAATAAGTTTGCAAAATGGAA
CTTGNAATGTCTGGTGTCATAAAGATTTTGCCGTCAACACCCAAAACCTA
ATGGGAAAGAACTTTTCTTCTTTTGGTATCATTACATTTTCCCNCGGGGT
TATGTTTCTCTTGATCAGATATGAATCAAGATTCCATGGTATTTATAACC
CCCCATCTT
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