CF417233

Overview
NameCF417233
Unique NameCF417233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 72/178 (40.45%), Postives = 104/178 (58.43%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG  G+AL  D L +PE +   + +AF+ A+W WMTP + ++PS H   VG ++P   D  + R   FG   NI+ G   C +     +NN +  Y  Y  ++G
Sbjct:  100 RKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQ-WPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTP-RDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLG 275          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 8.065e-37
Identity = 70/186 (37.63%), Postives = 103/186 (55.38%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G A+  DLLN+P+ +  +A +AF+AAIW WMT  +  +PS H    G W+P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y ++ G  P
Sbjct:  132 GDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSA--TWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMT-AQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNP 314          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.065e-37
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            G    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S ++  PC PG +YYGRG I + +N+NYG  G A+  DLL++P+ +  +AT++F+ A+W WMTP + ++PS+HD   G W P+  D  + R P +G   NI+ G   CG G  D + N +  Y  Y    G
Sbjct:  135 GNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEW--PCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTP-QGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFG 314          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.053e-36
Identity = 69/178 (38.76%), Postives = 103/178 (57.87%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            + +E+ AFL     +T+ G+  A  GP +WG C+  E+  + SYC  S ++  PC P  +Y+GRG I + +NYNYG  GEA+  DLLN+PE +  +  ++F+ A+W WMTP +  +PS HD   G W P+  D  + R P +G   NI+ G   CG G  D + N +  Y  Y D++G
Sbjct:  137 RKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEW--PCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTP-QSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLG 311          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.828e-36
Identity = 70/186 (37.63%), Postives = 103/186 (55.38%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G    + + +  Y  Y  ++G  P
Sbjct:  126 GDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP-QSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSP 308          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 71/181 (39.23%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  ++G  P
Sbjct:  124 RKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSP 301          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 71/181 (39.23%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            + +EI AFLA    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  ++G  P
Sbjct:  120 RKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSP 297          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.917e-36
Identity = 70/186 (37.63%), Postives = 103/186 (55.38%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F++A+W WMTP +  +PS HD  +G W+P+  D  + R P FG   NI+ G   CG+G    + + +  Y  Y  ++G  P
Sbjct:  121 GDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTP-QSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSP 303          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.165e-35
Identity = 70/181 (38.67%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  ++ ++F++AIW WMTP +  +PS HD   G W+P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y  ++G  P
Sbjct:  118 RKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTP-QSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSP 295          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.987e-35
Identity = 69/181 (38.12%), Postives = 101/181 (55.80%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            + +EI AF A    +T+ G+  A  GP AWG C+  E      YC  S ++  PC PG +Y+GRG I I  NYNYG  G A+  DLLN+P+ +  +  ++F+ A+W WMTP +  +PS HD  +G W P+  D  + R P FG   NI+ G   CG+G  + + + +  Y  Y  ++G  P
Sbjct:  130 RKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQW--PCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTP-QSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTP 307          
The following BLAST results are available for this feature:
BLAST of CF417233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI10_ORYSJ3.620e-3740.45Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_ARATH8.065e-3737.63Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_ORYSJ8.065e-3737.70Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI9_ORYSJ1.053e-3638.76Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_TOBAC6.828e-3637.63Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIC_SOLLC8.917e-3639.23Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI3_SOLTU8.917e-3639.23Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_TOBAC8.917e-3637.63Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI2_SOLTU1.165e-3538.67Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU1.987e-3538.12Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-163 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417233 ID=CF417233; Name=CF417233; organism=Citrus sinensis; type=EST; length=663bp
GGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGT
GGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGG
CCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGT
GATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTA
TGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCACTG
GGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGCAG
AATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCAGT
CAAGAAATCCCAGCCTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGC
CCACCAAGAATGATACTTTGTCCAAACGGGGACCTAACTTTGGTACCACA
ATGAATATCCTCTATGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGC
TATGAACAACATTGTCTCTCATTACTTGTATTACCTTGATCTGGTTGGGT
GTTGGCCGAGAGCAGGCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCA
GAAAGCCTTCAACCCAAACACCGCACCTTCAGCTGCATCTTTCTTGAGGA
CGTTTATTGTAGC
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