CF417233

Overview
NameCF417233
Unique NameCF417233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.424e-33
Identity = 65/177 (36.72%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLV 546
            + +E+ AF A    +TS    +    P  WG C  +E++P+  YCD   K +YPC   A+YYGRG + + WNYNYG  G  L  +LL+ PE +  +  L+FEAA+W WM P     PS H+   G W P++ D  + R P FG   NI+     C +       N + +YL Y D++
Sbjct:  114 RKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCV--ADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDML 288          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.859e-33
Identity = 65/178 (36.52%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            + +++ AFLA    +T+ G+  A  G  AWG C+  E   +  YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D++G
Sbjct:   76 RKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQW--PCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMT-AQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILG 250          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.428e-33
Identity = 72/178 (40.45%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            + +E+ AFLA     TS       GGP +WG CY      +  +C  + ++  PC PG  Y+ RG + I +NYNYGA GEA+ ADLL +PE +  + T+AF+ A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D++G
Sbjct:  148 RKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLG 314          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.428e-33
Identity = 72/178 (40.45%), Postives = 99/178 (55.62%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            + +E+ AFLA     TS       GGP +WG CY      +  +C  + ++  PC PG  Y+ RG + I +NYNYGA GEA+ ADLL +PE +  + T+AF+ A+W WMT    SQPS H    G W PT  D+ + R P +G T NIL G   C  G+  A  + V+ Y  Y D++G
Sbjct:  148 RKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLG 314          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 66/182 (36.26%), Postives = 99/182 (54.40%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLV 546
            G+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S ++  PC PG  YYGRG I +  NYNYG  G A+  DLL +P+ +  + T++F+ A+W WMT  +  +PS+H    G W P+  D  + R P FG   NI+ G   CG G    + + +  Y  Y D++
Sbjct:  126 GSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQW--PCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT-AQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDIL 304          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.405e-26
Identity = 62/182 (34.07%), Postives = 89/182 (48.90%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG-DIDAMNNIVSHYLYYLDL 543
            G    + +E+ AF      +T+ G+  A  GP AWG C  +E++PS                   YYGRG I +   YNY   G+AL  DL+N+P+ +  +  +AF  AIW WMT  +  +PS HD     W P+ +D  S R P +G   NI+ G   CG+G   D   + V +Y  Y D+
Sbjct:   72 GNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMT-AQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDM 236          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.995e-24
Identity = 58/180 (32.22%), Postives = 90/180 (50.00%), Query Frame = 1
Query:   16 KMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCW 555
            + +E+ AFLA    +T+ G+  A  GP                         Y     ++Y+GRG I I +NYNYGA G+A+  DLL +P+ +  + T+ F+ A+W WMTP +  +PS+HD   G W P+  D  + R P +G   NI+ G   CG+G     +++     YY D + C+
Sbjct:   44 RKREVAAFLAQTSHETTGGWPTAPDGP-------------------------YELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP-QSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQ---ESHVADRIGYYKDNLDCY 194          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 59/186 (31.72%), Postives = 93/186 (50.00%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + KEI AF      +T+ G  ++  GP A G C+  E +                  G  YYGRG I +    NY   G+A++ DL+N+P+ +  +AT++F+ AIW WMTP + ++PS HD   G W P+  DT + R P +G   NI+ G   CG+G    + + + +Y   + ++   P
Sbjct:   72 GDDTARKKEIAAFFGQTSHETTGGT-LSPDGPYAGGYCFLREGNQM----------------GNGYYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTP-QGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAP 239          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 57/176 (32.39%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   22 KEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            +E+ AF      +T+ G    +     WG C+  E++ + S                 YYGRG I +    NY A G AL  DL+ +P+ +  +A ++F+ AIW WMT  + ++PS HD  +G W P+  DT + R P +G   NI+ G   CG G  DA  + + +Y  Y D++G
Sbjct:   86 RELAAFFGQTSHETTGGTR-GSSDQFQWGYCFKEEINKATS---------------PPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLG 244          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.611e-22
Identity = 57/186 (30.65%), Postives = 90/186 (48.39%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + KEI AF      +T+ G  ++  GP A G C+  E +                  G+ +YGRG I +    NY   G+A+  DL+N+P+ +  +AT++F+ AIW WMT  + ++PS HD   G W P+  D  + R P +G   NI+ G   CG+G    + + +  Y  Y  ++   P
Sbjct:   65 GDDTARKKEIAAFFGQTSHETTGG-SLSADGPFAGGYCFVREGNQM----------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT-AQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAP 232          
The following BLAST results are available for this feature:
BLAST of CF417233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR1.424e-3336.72Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIC_SECCE1.859e-3336.52Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI7_ORYSJ2.428e-3340.45Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.428e-3340.45Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIA_SECCE4.142e-3336.26Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI11_ORYSJ6.405e-2634.07Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA5.995e-2432.22Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIT_PETHY1.131e-2231.72Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ1.131e-2232.39Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC5.611e-2230.65Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-163 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417233 ID=CF417233; Name=CF417233; organism=Citrus sinensis; type=EST; length=663bp
GGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGT
GGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGG
CCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGT
GATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTA
TGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCACTG
GGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGCAG
AATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCAGT
CAAGAAATCCCAGCCTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGC
CCACCAAGAATGATACTTTGTCCAAACGGGGACCTAACTTTGGTACCACA
ATGAATATCCTCTATGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGC
TATGAACAACATTGTCTCTCATTACTTGTATTACCTTGATCTGGTTGGGT
GTTGGCCGAGAGCAGGCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCA
GAAAGCCTTCAACCCAAACACCGCACCTTCAGCTGCATCTTTCTTGAGGA
CGTTTATTGTAGC
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