CF417233

Overview
NameCF417233
Unique NameCF417233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.633e-21
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A++ DL+N+P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G+W P+  D  + R P  G   NI+ G   CG G   A+ + + +Y  Y  ++   P
Sbjct:   73 GDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAP 238          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.132e-21
Identity = 57/186 (30.65%), Postives = 89/186 (47.85%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A+  +L+N+P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G W P+  D  + R P +G   NI+ G   CG G  DA+ + + +Y  Y  ++   P
Sbjct:   73 GDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAP 238          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 56/184 (30.43%), Postives = 96/184 (52.17%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQS-YCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVG 549
            G    + +E+ AFLAH+   TS G       P AWGLC+ +  + +++ +C  S    +PC  G +Y  RG I +  N+NYG  G+A+  DL+ +P+ +E++  ++F+ A+W WM+    ++PS HD  +        ++ + R PN G   NI+      G  D    ++ +  Y  Y D++G
Sbjct:  174 GDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQ-HDNKPSCHDIVL------NANSAANRIPNKGVIGNII--SRAFGHDDFAVRSSSIGFYKRYCDMLG 344          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 60/192 (31.25%), Postives = 89/192 (46.35%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWPRAGRT 573
            G+  D  +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG  G+++  D L  P+ + ++  LAF+ A+W W   V       HDAFV              G  FG T+  + G   C   +  A++N V++Y  +    G  P +  T
Sbjct:  113 GSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV-------HDAFVS-------------GQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLT 270          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 58/186 (31.18%), Postives = 81/186 (43.55%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            G+++   +EI AF AH   +T                CY  E++ S +YCD + K  +PC  G +YYGRG + I WNYNYG  G A+  D L  P  + ++A +AF+AA+W WM  V    P                        FG T   +     CG  +   MN  V +Y  Y   +G  P
Sbjct:  114 GSQVQGKREIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQ----------------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDP 263          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 56/178 (31.46%), Postives = 79/178 (44.38%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYY 534
            GT+++  +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNYG  G  +  + L  P  + Q+A +AF+ A+W WM  V    P                        FG T+  + G   C   +   MN  V +Y  Y
Sbjct:  125 GTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQ----------------------GFGATIRAINGALECNGNNPAQMNARVGYYKQY 266          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.294e-18
Identity = 52/150 (34.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:  112 CYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            CY  E++  S+ YCD++ +  YPC PG  Y+GRG I + WNYNYGA G++L  +LL  PE +  N T+AF   +W WM  V               +P  N         FG T+  + G   C  G+  A+N  + +Y  Y   +G  P
Sbjct:  137 CYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSV---------------RPVLNQ-------GFGATIRAINGME-CNGGNSGAVNARIRYYRDYCGQLGVDP 262          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 57/172 (33.14%), Postives = 82/172 (47.67%), Query Frame = 1
Query:    4 TKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFG-TTMNILYGESVCGQGDIDAMNNI 513
            T  D  +EI AF AHV  +T               +CY +E++  S  YCD + K  +PC PG +YYGRG + I WNYNYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V +       A +       N  L   G N G     + Y +  C Q  +D   N+
Sbjct:  133 TNDDSKREIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATI----RAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNL 286          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 57/186 (30.65%), Postives = 84/186 (45.16%), Query Frame = 1
Query:    4 TKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLVGCWP 558
            T  D  +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NYG  G+ +  D L  P+ + Q+ T++F+ A+W WM                      N+        FG T+  + G   C   +  A+N  V++Y  Y    G  P
Sbjct:  130 TNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM----------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSP 279          
BLAST of CF417233 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.095e-17
Identity = 51/184 (27.72%), Postives = 84/184 (45.65%), Query Frame = 1
Query:    1 GTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDAMNNIVSHYLYYLDLV 546
            G    + KEI AF      +T+ G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    +L+N+P+ +  +  ++F+ AIW WMT  + ++PS H+  +G W P+  DT + R P +G   NI+ G+  CG G   A  + +  Y  Y  ++
Sbjct:   73 GDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGML 234          
The following BLAST results are available for this feature:
BLAST of CF417233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_TOBAC1.633e-2130.65Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC2.132e-2130.65Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI1.170e-1930.43Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ1.528e-1931.25Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE9.905e-1931.18Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE1.294e-1831.46Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_BRANA1.294e-1834.67Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI5_ORYSJ2.207e-1833.14Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ6.420e-1830.65Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC1.095e-1727.72Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-163 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-002_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417233 ID=CF417233; Name=CF417233; organism=Citrus sinensis; type=EST; length=663bp
GGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGT
GGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGG
CCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGT
GATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTA
TGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCACTG
GGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGCAG
AATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCAGT
CAAGAAATCCCAGCCTTCAGCCCATGATGCCTTTGTTGGCAACTGGAAGC
CCACCAAGAATGATACTTTGTCCAAACGGGGACCTAACTTTGGTACCACA
ATGAATATCCTCTATGGTGAGAGCGTATGCGGTCAGGGTGATATTGATGC
TATGAACAACATTGTCTCTCATTACTTGTATTACCTTGATCTGGTTGGGT
GTTGGCCGAGAGCAGGCAGGACCTAATGAAGAACTCTCTTGTGCTGAGCA
GAAAGCCTTCAACCCAAACACCGCACCTTCAGCTGCATCTTTCTTGAGGA
CGTTTATTGTAGC
back to top