CF417238

Overview
NameCF417238
Unique NameCF417238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:66..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.860e-51
Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  140 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIYRR 658
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG +Y+GRGPIQ+++N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS  +VI  R
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGR 178          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.305e-50
Identity = 98/198 (49.49%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   65 GSAQNCGSGVVCGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVI 649
            G    C  G  CG   T   + GG  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +  +                +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSC  VI
Sbjct:   52 GCQSQCSGG--CGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVI 247          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.798e-50
Identity = 95/178 (53.37%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  122 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVI 649
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+  +               +YYGRGPIQLT   NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSC  VI
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD--------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVI 180          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.961e-50
Identity = 96/176 (54.55%), Postives = 124/176 (70.45%), Query Frame = 2
Query:  122 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVI 649
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A  G +A GYC++R+ +   S              +YGRGPIQLT   NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSC +VI
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSG-------------FYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVI 174          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 6.479e-50
Identity = 98/197 (49.75%), Postives = 122/197 (61.93%), Query Frame = 2
Query:   68 SAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX---LPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEV 646
            SA  CG G          G+ G  +  I+SR +F+ +L +RNDA CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +   A+                 +YYGRGPIQL++N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSC  V
Sbjct:   61 SAAGCGGG----GPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAV 253          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.555e-48
Identity = 97/179 (54.19%), Postives = 122/179 (68.16%), Query Frame = 2
Query:  122 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIYRR 658
            GT    +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG T +P G YA GYC++R+ +   +              YYGRGPIQLT   NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSC +VI  R
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNG-------------YYGRGPIQLTGQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGR 184          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.351e-47
Identity = 95/194 (48.97%), Postives = 126/194 (64.95%), Query Frame = 2
Query:   80 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIYRR 658
            C +  +     +G    G  +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG T     ++ WGYC+  +++ A+S              YYGRGPIQLT   NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSC +VI  R
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSPP------------YYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGR 192          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.756e-47
Identity = 91/173 (52.60%), Postives = 117/173 (67.63%), Query Frame = 2
Query:  140 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVIYRR 658
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS  +VI  R
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGR 183          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 91/170 (53.53%), Postives = 115/170 (67.65%), Query Frame = 2
Query:  140 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVI 649
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ   +               +YYGRGPIQLT   NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS  +VI
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD--------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVI 180          
BLAST of CF417238 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.275e-45
Identity = 83/180 (46.11%), Postives = 114/180 (63.33%), Query Frame = 2
Query:  116 GHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCPEVI 649
            G+      +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++P SS  D             Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSC +V+
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVM 220          
The following BLAST results are available for this feature:
BLAST of CF417238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHID_SOLLC5.860e-5153.45Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI3_ORYSJ1.305e-5049.49Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SOLLC3.798e-5053.37Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_SOLLC4.961e-5054.55Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ6.479e-5049.75Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY3.555e-4854.19Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI8_ORYSJ1.351e-4748.97Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC8.756e-4752.60Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC1.144e-4653.53Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ6.275e-4546.11Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-168 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417238 ID=CF417238; Name=CF417238; organism=Citrus sinensis; type=EST; length=672bp
TTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTCTCTAGTTTTAT
CTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGC
GGTGAACGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGAT
CATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCC
GATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
CAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGACCGATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGG
CAAGTTAGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCC
CTTGCCAGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATT
GCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAAT
CCAGACCTACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCCCGAAGTCATTT
ATCGACGAATGGAAACCATCAG
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