CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.038e-15
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  263 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 538
            K+ P   PK  FLTKI+HPN+   G IC++  K  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   71 KDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162

HSP 2 Score: 32.3426 bits (72), Expect = 1.038e-15
Identity = 14/50 (28.00%), Postives = 28/50 (56.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++
Sbjct:   24 QEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDF 73
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.348e-15
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = -3 
Query:  263 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 538
            K+ P   PK  FLTKI+HPN+   G IC++  K  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   71 KDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162

HSP 2 Score: 31.187 bits (69), Expect = 1.348e-15
Identity = 15/50 (30.00%), Postives = 27/50 (54.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            Q + + P  GI    +E ++      I GP  +PY  GVF+++L L +++
Sbjct:   24 QDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDF 73
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.279e-15
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = -3 
Query:  272 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 538
            K+ P   PK  FLTKI+HPN+   G IC++  K  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A
Sbjct:   71 KDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159

HSP 2 Score: 31.5722 bits (70), Expect = 2.279e-15
Identity = 14/50 (28.00%), Postives = 28/50 (56.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            Q + + P  GI    +E ++     +I GP  +PY  G+F+++L L +++
Sbjct:   24 QDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDF 73
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 2.954e-15
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = -3 
Query:  326 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDK--------WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 529
            P A P++ F ++++HPNI   G++C+ I            WSPA +I T+LLS+ +LL+ PNPD P + + AK ++
Sbjct:   61 PYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136

HSP 2 Score: 41.2022 bits (95), Expect = 2.954e-15
Identity = 17/50 (34.00%), Postives = 31/50 (62.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            + L+  P+     S +E++M  ++V++ GP  + YEGG+FK ++  P EY
Sbjct:   11 RHLIENPSENFKISVNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 3.893e-15
Identity = 30/89 (33.71%), Postives = 51/89 (57.30%), Query Frame = -3 
Query:  311 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKD-------------KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 538
            ++ P   PK++F+++I+HPNIDK G +C+ I  D             +W P   + T+LLS+ ++L+ PN + P + + AK  + N AE
Sbjct:   61 RDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAE 149

HSP 2 Score: 38.1206 bits (87), Expect = 3.893e-15
Identity = 19/45 (42.22%), Postives = 26/45 (57.78%), Query Frame = -2 
Query:  531 PAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEY 662
            P  G SA   +DN  Y + V+++GP  + YEGG FK  L  P +Y
Sbjct:   19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 63
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.995e-15
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = -3 
Query:  326 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDK--------WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK 529
            P   P++ F ++++HPNI   G++C+ I            WSPA +I TVLLS+ +LL+ PNPD P + + AK ++
Sbjct:   61 PYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYR 136

HSP 2 Score: 41.5874 bits (96), Expect = 4.995e-15
Identity = 17/50 (34.00%), Postives = 31/50 (62.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            + L+  P+     S +EDN+  ++V++ GP  + YEGG+FK ++  P +Y
Sbjct:   11 KNLIVNPSEHFKISVNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.452e-14
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = -3 
Query:  275 NXPMAAPKVRFLTKIYHPNID-KLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVET-AKEWTRLY 535
            N P+  P ++F+TKI+HPNI  K G ICLD+ K  WS    +++V  SI ALLS P  D PL+ +     +  + +  ++ A+ +TRLY
Sbjct:   59 NYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147

HSP 2 Score: 30.8018 bits (68), Expect = 1.452e-14
Identity = 12/34 (35.29%), Postives = 21/34 (61.76%), Query Frame = -2 
Query:  531 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 632
            E ++  +  +I GP  +PYE G F+L++ +P  Y
Sbjct:   27 ESDLYRWVAIIKGPPDTPYENGKFELDISVPTNY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.863e-14
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P  +P V F+TKIYHPN+D++ G +CLD+    WSP   +  V  + +  LL  PNP DPL+   A     +     +  KE+   YA
Sbjct:   60 PYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEKYA 147

HSP 2 Score: 35.039 bits (79), Expect = 1.863e-14
Identity = 16/33 (48.48%), Postives = 21/33 (63.64%), Query Frame = -2 
Query:  531 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 629
            D M+ F V   GP  S YEGGV+K+ + LP+ Y
Sbjct:   27 DGMQEFFVEFSGPKDSIYEGGVWKIRVELPDAY 59
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.873e-14
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = -3 
Query:  311 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIX-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 538
            +N P++ P V F ++++HPN+   G++C+ I               ++W+P   + +++LSI ++LS PN + P +   AK W+ N AE
Sbjct:   63 ENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAE 151

HSP 2 Score: 36.1946 bits (82), Expect = 1.873e-14
Identity = 19/49 (38.78%), Postives = 26/49 (53.06%), Query Frame = -2 
Query:  531 LLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P  G SA    E N+  ++V I+GP  + YEGG F   +  PE Y
Sbjct:   17 LCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENY 65
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.882e-14
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = -3 
Query:  275 PMAAPKVRFLTKIYHPNIDKLGRICLD-IXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 529
            P   PK+ F TKIYHPNID+ G++CL  I  + W PA +   V+ S+ AL++ P P+ PL  ++A+ +  +  +  + A+E+T+ Y
Sbjct:   62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147

HSP 2 Score: 26.9498 bits (58), Expect = 1.882e-14
Identity = 9/24 (37.50%), Postives = 15/24 (62.50%), Query Frame = -2 
Query:  531 ILGPTQSPYEGGVFKLELFLPEEY 602
            ++ P   PY+ G F++E+  P EY
Sbjct:   38 LIVPDNPPYDKGAFRIEINFPAEY 61
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBE2S_DROPE1.038e-1538.04Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROVI1.348e-1538.04Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROMO2.279e-1538.20Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UBC_ASFWA2.954e-1538.16Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC7_CAEEL3.893e-1533.71Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBC_ASFM24.995e-1538.16Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBCX_DICDI1.452e-1440.45Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC5_ARATH1.863e-1437.50Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]
UBC14_ARATH1.873e-1430.34Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UB2L3_PONAB1.882e-1438.37Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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