CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.599e-13
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  269 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P  +P + F+ KI+HPNID+  G +CLD+    W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA+
Sbjct:   62 PFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 150          

HSP 2 Score: 34.2686 bits (77), Expect = 5.599e-13
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2
Query:  531 FNVMILGPTQSPYEGGVFKLELFLPEEY 614
            F V   GP  +PYEGGV+K+ + LP++Y
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKY 61          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.599e-13
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  269 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P  +P + F+ KI+HPNID+  G +CLD+    W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA+
Sbjct:   62 PFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 150          

HSP 2 Score: 34.2686 bits (77), Expect = 5.599e-13
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2
Query:  531 FNVMILGPTQSPYEGGVFKLELFLPEEY 614
            F V   GP  +PYEGGV+K+ + LP++Y
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKY 61          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 5.599e-13
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = -3
Query:  269 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVLLS-IQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 529
            P  +P + F+ KI+HPNID+  G +CLD+    W+    +  +  S +  LL+ PNP DPL+ + A  +     E  +  KE+ + YA+
Sbjct:   62 PFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 150          

HSP 2 Score: 34.2686 bits (77), Expect = 5.599e-13
Identity = 14/28 (50.00%), Postives = 20/28 (71.43%), Query Frame = -2
Query:  531 FNVMILGPTQSPYEGGVFKLELFLPEEY 614
            F V   GP  +PYEGGV+K+ + LP++Y
Sbjct:   34 FVVKFYGPQGTPYEGGVWKVRVDLPDKY 61          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.599e-13
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = -3
Query:  338 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIA 529
            P  +P + F+ +I+HPNID+L G +CLD+    WSP   +  +  + +  LL  PN  DPL+   A
Sbjct:   60 PWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAA 125          

HSP 2 Score: 40.817 bits (94), Expect = 5.599e-13
Identity = 16/33 (48.48%), Postives = 24/33 (72.73%), Query Frame = -2
Query:  531 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 629
            DNM+ F V   GP+++PY GG++K+ + LP EY
Sbjct:   27 DNMQEFYVRFHGPSETPYSGGIWKVHVELPSEY 59          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_NEMVE (Ubiquitin-conjugating enzyme E2 S OS=Nematostella vectensis GN=v1g237158 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = -3
Query:  272 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 538
            K+ P A PK  FLTKI+HPN+ K G IC++  K  W P L I+ VLL+++ LL  PNP+  L+E   K       +  + AK +T ++A
Sbjct:   71 KDFPAAPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKLLLERYDDYSKRAKMFTEIHA 159          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = -3
Query:  293 WNYFCLKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAK 556
            ++++   N P   PKV+ L K+YHPNID  G +CL+I ++ W P L +  V++ +Q L   PN  DPL+++ A     N  E     K
Sbjct:   73 FSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = -3
Query:  272 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 538
            K+ P A PK  FLTKI+HPN+   G IC+++ K  W   L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++A
Sbjct:   68 KDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.234e-12
Identity = 27/99 (27.27%), Postives = 52/99 (52.53%), Query Frame = -3
Query:  281 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 538
            ++ P+  PK++F T+I+HPN+   G +C+ I               ++W P     T+L+S+ ++LS+PN + P + + AK ++ N  E  +  +   R
Sbjct:   63 QDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVR 161          

HSP 2 Score: 34.6538 bits (78), Expect = 1.234e-12
Identity = 17/51 (33.33%), Postives = 26/51 (50.98%), Query Frame = -2
Query:  531 QRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEY 680
            + +   P  G S    +D   + + VMI+GP  + YEGG F   L  P++Y
Sbjct:   15 KEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDY 65          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.068e-12
Identity = 32/99 (32.32%), Postives = 51/99 (51.52%), Query Frame = -3
Query:  308 NXPMAAPKVRFLT----------------------KIYHPNID-KLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEA 535
            N P+  PK++F+                       K+ HPN++ K G ICLDI + KWSPA  +++ L++I  LL+ P P  PL+ ++A   K ++  A
Sbjct:   70 NYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTA 168          

HSP 2 Score: 36.965 bits (84), Expect = 2.068e-12
Identity = 15/40 (37.50%), Postives = 25/40 (62.50%), Query Frame = -2
Query:  531 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 650
            +   P ED +  ++ +I GP QSP+E  ++KLE+ +P  Y
Sbjct:   32 VDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNY 71          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.080e-12
Identity = 27/88 (30.68%), Postives = 50/88 (56.82%), Query Frame = -3
Query:  311 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIX------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 538
            +N P + P VRF ++++HPN+   GR+C+ I              ++W+P   + +++LSI ++LS+PN + P +   AK W+  + E
Sbjct:   65 QNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDE 152          

HSP 2 Score: 31.187 bits (69), Expect = 2.080e-12
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = -2
Query:  525 EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXN 632
            + N+  + V I+GP ++ Y+GG F   +  P+ Y N
Sbjct:   34 DSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPN 69          
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBE2H_MOUSE5.599e-1333.71Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN5.599e-1333.71Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN5.599e-1333.71Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC8_SCHPO5.599e-1337.88Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBE2S_NEMVE6.507e-1341.57Ubiquitin-conjugating enzyme E2 S OS=Nematostella ... [more]
UBC12_YARLI6.507e-1336.36NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]
UBE2S_RANCA1.110e-1241.57Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBC15_SCHPO1.234e-1227.27Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBCX_PICAN2.068e-1232.32Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC7_WHEAT2.080e-1230.68Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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