CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.082e-12
Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P++ PK+RF  +++HPNI   GR+C+ I               ++WSP   +  +LLS+ ++L+ PN +   + + +K W+ +  +  + AK+
Sbjct:   65 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQ 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.082e-12
Identity = 18/51 (35.29%), Postives = 28/51 (54.90%), Query Frame = -2
Query:  531 QRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +Y
Sbjct:   14 KQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 64          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 36/97 (37.11%), Postives = 58/97 (59.79%), Query Frame = -3
Query:  272 YFCLK---NXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 550
            +F LK   + P   P + F T+IYHPN D  G +CL I K + + P++++R+VL  I  LL  PNPDDPL  +IA+ ++ +     + A+++   +A
Sbjct:   57 HFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.705e-12
Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P++ PK+RF  +++HPNI   GR+C+ I               ++WSP   +  +LLS+ ++L+ PN +   + + +K W+ +  +  + AK+
Sbjct:   65 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.705e-12
Identity = 18/51 (35.29%), Postives = 28/51 (54.90%), Query Frame = -2
Query:  531 QRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +Y
Sbjct:   14 KQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 64          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.705e-12
Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P++ PK+RF  +++HPNI   GR+C+ I               ++WSP   +  +LLS+ ++L+ PN +   + + +K W+ +  +  + AK+
Sbjct:   65 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.705e-12
Identity = 18/51 (35.29%), Postives = 28/51 (54.90%), Query Frame = -2
Query:  531 QRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +Y
Sbjct:   14 KQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 64          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.705e-12
Identity = 26/93 (27.96%), Postives = 51/93 (54.84%), Query Frame = -3
Query:  290 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK-------------DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 529
            P++ PK+RF  +++HPNI   GR+C+ I               ++WSP   +  +LLS+ ++L+ PN +   + + +K W+ +  +  + AK+
Sbjct:   65 PLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 157          

HSP 2 Score: 33.113 bits (74), Expect = 2.705e-12
Identity = 18/51 (35.29%), Postives = 28/51 (54.90%), Query Frame = -2
Query:  531 QRLLSEPAPGISASP-SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            ++L   P  GI A P +E+N   +  +I+GP  + +E GVF   L  P +Y
Sbjct:   14 KQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 64          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.534e-12
Identity = 30/88 (34.09%), Postives = 45/88 (51.14%), Query Frame = -3
Query:  272 PMAAPKVRFLTKIYHPNIDKL-GRICLDIXKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P  +P + F  KIYHPN+D++ G +CLD+    WSP   +  +  + +  LL  PNP DPL+   A     ++       KE+   YA
Sbjct:   60 PYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          

HSP 2 Score: 30.8018 bits (68), Expect = 4.534e-12
Identity = 15/33 (45.45%), Postives = 19/33 (57.58%), Query Frame = -2
Query:  531 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 629
            D M  F V   GP  S Y+GGV+K+ + L E Y
Sbjct:   27 DGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAY 59          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2S_BOVIN (Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = -3
Query:  245 KNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA**HGGK 538
            K+ P + PK  FLTKI+HPN+   G IC+++ K  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++       GG+
Sbjct:   68 KDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHGGAGGPSGGR 165          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = -3
Query:  338 NXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 535
            N P   PKV+ L KIYHPNID  G +CL+I +  W+P L + ++L+ +Q L  +PN +DPL++  A
Sbjct:   79 NYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 5.925e-12
Identity = 23/96 (23.96%), Postives = 45/96 (46.88%), Query Frame = -3
Query:  281 PMAAPKVRFLTKIYHPNIDKLGRICLDIX-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTR 529
            P+  P ++F  + +HPN+ K G +C+ I               ++WSP   +  +LLS+ ++L+ PN +   + +  K W+ +  E     +   R
Sbjct:   66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLAR 161          

HSP 2 Score: 38.1206 bits (87), Expect = 5.925e-12
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = -2
Query:  522 LSEPAP-GISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYXNG 671
            L+E  P GI+A PS ED+   ++ +I GP  +P+EGG++   L  P +Y  G
Sbjct:   17 LTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLG 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  320 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 529
            P  APKV+  TK+YHPNID  G +CL+I ++ W P L I TV+  +  L + PN +DPL+ + A   + N
Sbjct:   89 PHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDN 158          
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UB2G2_BOVIN2.082e-1227.96Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC14_SCHPO2.472e-1237.11Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UB2G2_PONAB2.705e-1227.96Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE2.705e-1227.96Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN2.705e-1227.96Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC4_WHEAT4.534e-1234.09Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBE2S_BOVIN5.508e-1237.76Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN... [more]
UBC12_SCHPO5.508e-1245.45NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC7_SCHPO5.925e-1223.96Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
RCE1_ARATH9.395e-1244.29NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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