CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:178..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  320 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 529
            P   PKV+  T +YHPNID  G +CL+I ++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  320 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 529
            P   PKV+  T +YHPNID  G +CL+I ++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  320 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 529
            P   PKV+  T +YHPNID  G +CL+I ++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  335 LKNXPMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 541
            L+  P+  PKV    KI+HPNID  G+ICL+I ++ WSPAL ++ ++L + +L   PN +DPL++  A+
Sbjct:   88 LETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAE 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  320 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTN 529
            P   PKV+  T +YHPNID  G +CL+I ++ W P L I +++  +Q L   PNP+DPL++  A+  + N
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 156          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.788e-11
Identity = 28/95 (29.47%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  293 PMAAPKVRFLTKIYHPNIDKLGRICL-------------DIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 529
            P + P  RFLTK++HPNI + G +C+             ++  ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   69 PYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          

HSP 2 Score: 31.9574 bits (71), Expect = 2.788e-11
Identity = 17/49 (34.69%), Postives = 25/49 (51.02%), Query Frame = -2
Query:  531 LLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +Y
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDY 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.788e-11
Identity = 28/95 (29.47%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  293 PMAAPKVRFLTKIYHPNIDKLGRICL-------------DIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 529
            P + P  RFLTK++HPNI + G +C+             ++  ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   69 PYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          

HSP 2 Score: 31.9574 bits (71), Expect = 2.788e-11
Identity = 17/49 (34.69%), Postives = 25/49 (51.02%), Query Frame = -2
Query:  531 LLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +Y
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDY 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.788e-11
Identity = 28/95 (29.47%), Postives = 53/95 (55.79%), Query Frame = -3
Query:  293 PMAAPKVRFLTKIYHPNIDKLGRICL-------------DIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 529
            P + P  RFLTK++HPNI + G +C+             ++  ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   69 PYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          

HSP 2 Score: 31.9574 bits (71), Expect = 2.788e-11
Identity = 17/49 (34.69%), Postives = 25/49 (51.02%), Query Frame = -2
Query:  531 LLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +Y
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDY 68          
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = -3
Query:  335 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 529
            P   PKV   T +YHPNID  G +CL+I +  W P L I TV+  +  L   PNPDDPL+++ A+
Sbjct:  135 PYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQ 199          
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBC12_XENLA2.734e-1141.43NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE2.734e-1141.43NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN2.734e-1141.43NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_CANGA2.734e-1143.48NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_BOVIN2.734e-1141.43NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UB2R2_RABIT2.788e-1129.47Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE2.788e-1129.47Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN2.788e-1129.47Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC12_DICDI3.570e-1146.15NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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