CF417240

Overview
NameCF417240
Unique NameCF417240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:178..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.167e-28
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI +D+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ +    +A+EWTR YA
Sbjct:   61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYA 146

HSP 2 Score: 43.1282 bits (100), Expect = 2.167e-28
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -2 
Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +Y
Sbjct:   16 DPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.167e-28
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = -3 
Query:  266 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 529
            P   PKV F TK++HPNI+  G ICLDI K++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +   TA+ WT+ YA G
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148

HSP 2 Score: 43.8986 bits (102), Expect = 2.167e-28
Identity = 18/48 (37.50%), Postives = 29/48 (60.42%), Query Frame = -2 
Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P +Y
Sbjct:   13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.822e-28
Identity = 50/86 (58.14%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +  E A+EWTR YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146

HSP 2 Score: 43.5134 bits (101), Expect = 2.822e-28
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            Q L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   11 QDLGRDPPAQCSAGPVGDDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.674e-28
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = -3 
Query:  266 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 529
            P   PKV F TK++HPNI+  G ICLDI K++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +   TA+ WT+ YA G
Sbjct:   61 PFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148

HSP 2 Score: 43.5134 bits (101), Expect = 3.674e-28
Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = -2 
Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +Y
Sbjct:   13 LQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.783e-28
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI +D+WSPAL I  VLLSI ++L+ PNPD+PL   IA  +KT+ A    TA+EWTR YA
Sbjct:   61 PFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYA 146

HSP 2 Score: 40.817 bits (94), Expect = 4.783e-28
Identity = 17/45 (37.78%), Postives = 26/45 (57.78%), Query Frame = -2 
Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P    SA P  +++ ++   I+GP  SPY GGVF L +  P +Y
Sbjct:   16 DPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.783e-28
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PK+ F TKIYHPNI+  G ICLDI KD+WSPAL +  VLLSI +LL+  NPDDPL   IA  +KT+  +   TA+EWT+ YA
Sbjct:   62 PFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYA 147

HSP 2 Score: 43.5134 bits (101), Expect = 4.783e-28
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -2 
Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +Y
Sbjct:   17 DPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.227e-28
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = -3 
Query:  266 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 529
            P   PKV F TK+YHPNI+  G ICLDI K++WSPAL +  VLLSI +LL+ PNPDDPL   IA  +KT+  +   TA+ WT+ YA G
Sbjct:   61 PFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148

HSP 2 Score: 41.5874 bits (96), Expect = 6.227e-28
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = -2 
Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P+ D+M  +   I+GP  SP+ GGVF + +  P +Y
Sbjct:   13 LQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.107e-28
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPN++  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:   61 PFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146

HSP 2 Score: 42.743 bits (99), Expect = 8.107e-28
Identity = 19/48 (39.58%), Postives = 27/48 (56.25%), Query Frame = -2 
Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EY
Sbjct:   13 LAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 8.107e-28
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPN++  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +   TA+EWT+ YA
Sbjct:   61 PFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYA 146

HSP 2 Score: 42.743 bits (99), Expect = 8.107e-28
Identity = 19/48 (39.58%), Postives = 27/48 (56.25%), Query Frame = -2 
Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  ++M ++   I+GP  SPY+GG F L +  P EY
Sbjct:   13 LAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEY 60
[Close]
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = -3 
Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F TK++HPNI+  G ICLDI KD+WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +    A+ WT+ YA
Sbjct:   61 PFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYA 146

HSP 2 Score: 44.669 bits (104), Expect = 1.055e-27
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = -2 
Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            + L  +P    SA P+ ++M ++   I+GP +SPY GGVF + +  P +Y
Sbjct:   11 KELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDY 60
The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
UBC4_SCHPO2.167e-2858.14Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC10_ARATH2.167e-2855.68Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBCD1_DROME2.822e-2858.14Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC9_ARATH3.674e-2855.68SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC1_COLGL4.783e-2858.14Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_YEAST4.783e-2856.98Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC30_ARATH6.227e-2855.68Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
U2D2B_RAT8.107e-2855.81Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE8.107e-2855.81Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UBC29_ARATH1.055e-2755.81Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT
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