CF417240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.359e-27 Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P P+VRFLT IYHPNID GRICLDI K W P+L I TVL SIQ L++ PNPDDPL +I+ +K N+ ++ AK+WT +A Sbjct: 62 PFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151 HSP 2 Score: 45.4394 bits (106), Expect = 1.359e-27 Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L EP PGI+ +D + ILG +PYE GVF LE+ +PE Y Sbjct: 14 LAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERY 61
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.374e-27 Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + A+EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146 HSP 2 Score: 44.2838 bits (103), Expect = 1.374e-27 Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = -2 Query: 531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680 Q L +P SA P D++ ++ I+GP +SPY+GGVF L + P +Y Sbjct: 11 QDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.789e-27 Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P+ PK+ TKIYHPNI+ G ICLDI KD+WSPAL I VLLSI +LL+ NPDDPL IA +K + + TAKEWT+ YA Sbjct: 61 PLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146 HSP 2 Score: 43.1282 bits (100), Expect = 1.789e-27 Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -2 Query: 531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665 +P SA P D++ ++ I+GP SPY GGVF L + P +Y Sbjct: 16 DPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60
BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27 Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3 Query: 272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529 P PKV F T+IYHPNI+ G ICLDI + +WSPAL I VLLSI +LL PNPDDPL IA+ +KT+ + ++EWT+ YA Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146 HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2 Query: 531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674 L +P SA P D+M ++ I+GP SPY+GGVF L + P +Y Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60 The following BLAST results are available for this feature:
BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bpback to top |