CF417240 | Citrus Genome Database

Overview


Name	CF417240
Unique Name	CF417240
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	681

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4591	contig	Csv1_Contig4591:178..859.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.055e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.055e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.359e-27
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXK----DKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   P+VRFLT IYHPNID  GRICLDI K      W P+L I TVL SIQ L++ PNPDDPL  +I+  +K N+   ++ AK+WT  +A
Sbjct:   62 PFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151

HSP 2 Score: 45.4394 bits (106), Expect = 1.359e-27
Identity = 21/48 (43.75%), Postives = 27/48 (56.25%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  EP PGI+    +D +      ILG   +PYE GVF LE+ +PE Y
Sbjct:   14 LAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERY 61

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.374e-27
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+     + A+EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146

HSP 2 Score: 44.2838 bits (103), Expect = 1.374e-27
Identity = 20/50 (40.00%), Postives = 30/50 (60.00%), Query Frame = -2

Query:  531 QRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 680
            Q L  +P    SA P  D++ ++   I+GP +SPY+GGVF L +  P +Y
Sbjct:   11 QDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.789e-27
Identity = 49/86 (56.98%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P+  PK+   TKIYHPNI+  G ICLDI KD+WSPAL I  VLLSI +LL+  NPDDPL   IA  +K +  +   TAKEWT+ YA
Sbjct:   61 PLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYA 146

HSP 2 Score: 43.1282 bits (100), Expect = 1.789e-27
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = -2

Query:  531 EPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 665
            +P    SA P  D++ ++   I+GP  SPY GGVF L +  P +Y
Sbjct:   16 DPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

BLAST of CF417240 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.032e-27
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -3

Query:  272 PMAAPKVRFLTKIYHPNIDKLGRICLDIXKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 529
            P   PKV F T+IYHPNI+  G ICLDI + +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146

HSP 2 Score: 45.0542 bits (105), Expect = 3.032e-27
Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = -2

Query:  531 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEY 674
            L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +Y
Sbjct:   13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDY 60

The following BLAST results are available for this feature:

BLAST of CF417240 vs. ExPASy Swiss-Prot

BLAST of CF417240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199


Match Name	E-value	Identity	Description
UB2D2_XENLA	1.055e-27	55.81	Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev...	[more]
UB2D2_RAT	1.055e-27	55.81	Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve...	[more]
UB2D2_MOUSE	1.055e-27	55.81	Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus...	[more]
UB2D2_HUMAN	1.055e-27	55.81	Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens...	[more]
UB2D2_BOVIN	1.055e-27	55.81	Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G...	[more]
UBE2T_MOUSE	1.359e-27	53.33	Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ...	[more]
UBC2_CAEEL	1.374e-27	55.81	Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi...	[more]
UBC4_CANAL	1.789e-27	56.98	Ubiquitin-conjugating enzyme E2 4 OS=Candida albic...	[more]
UB2D3_RAT	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve...	[more]
UB2D3_PONAB	3.032e-27	54.65	Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-170 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-003_A07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417240 ID=CF417240; Name=CF417240; organism=Citrus sinensis; type=EST; length=681bp
GTTTTTTTTTTTTTTTTTTTTTGCTTCGAAATTTAAGAGTTGAGAAACAA
TGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCCACAAGAAGA
AAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATGTCAAACTCC
GAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATTTTAAACACA
GTGAATAGCATACATTGCACAATTGTTATTTGAATGAAGTGATATTTTCC
ACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCATTCCTTCGCTG
TTTCAACCGCTTCGGCCTCATTTGTTTTCCAGTGTTTGGCAATGTTCTCA
GAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCTTGAATGCTCAA
AAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTCTTTCANAATAT
CAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGATATATCTTGGTA
AGAAATCGGACCTTTGGAGCAGCCATTGGNATATTCTTCAGGCAAAAATA
ATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGTGTTGGACCAAGG
ATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAGATGCACTTAT
TCCTGGTGCTGGTTCACTGAGGAGACGCTGT